Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq30 116 3e-21 seq2 98.7 8e-16 seq536 95.1 1e-14 seq131 86.0 5e-12 >seq30 Length=14751797 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 830311 GGTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTG 830370 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 830371 GTTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 830430 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 830431 AGACTCAATGATGGCATACCAAAG 830454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||| ||||| | ||||| |||||||| | Sbjct 832099 CATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCGCTGCTCCTCCTT 832158 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || || || ||||||||||||||||| |||||| |||||||||| Sbjct 832159 TCCTGTG-TTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGTTCCAGGT 832217 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 832218 AAATAGCAAA 832227 >seq2 Length=46620681 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| || || || ||| ||| |||||| Sbjct 41372728 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGTTTTCAAATTCTCATCGAGAAT 41372787 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || ||||| |||||||| || Sbjct 41372788 GTTCACTCAGAGATGTACAGTTTGCTAATAGATACTTACATCAGAGA 41372834 >seq536 Length=337149 Score = 95.1 bits (104), Expect = 1e-14 Identities = 290/439 (66%), Gaps = 12/439 (3%) Strand=Plus/Minus Query 61026 TGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGA 61085 |||||| ||| || ||||| || | || || || | || || || || | | | Sbjct 202668 TGAACCACTACTGGGAGAGAGCCCCCACCGCTTGGTCATCTTTCCTATGGAACACCATGG 202609 Query 61086 TATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 ||| ||| |||| || || || || |||||||| ||||| | |||||||| | | | Sbjct 202608 TATCCGGCAGATGTGTAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGCTCT 202549 Query 61146 GTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGC--GGTGAACAACATTTCATTAA 61202 |||| ||||| | ||||||| || | | ||| | |||||| |||| || | Sbjct 202548 -TCCAGGGACATTCAGCACTGGGAAGCCCTGA---AGCCTGAGGAACAATATTTTAT-AT 202494 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || | |||| |||| ||| || || | || || || |||||||| |||| | Sbjct 202493 CCACATTCTGGCTTTCTCTGCGGCAGGTGATAGCATAGTAAAGGAGAATTTGGTGGAGCC 202434 Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || || || || ||| | | || || || ||||||| |||||||| ||||||| Sbjct 202433 ATTTAGC-CAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCTATGGCTTCCAAATTGCCA 202375 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || | || || || ||||| ||| |||| || || || || || | || Sbjct 202374 TGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTATATTAAAGACTTCA 202315 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | ||| | |||||||||| || || || || |||||| |||||| Sbjct 202314 AAGAAAGGGAATTTCTCTTCAATGCCACTGAAACAATGCCTTGTGTGAAGAAGAAAGC-- 202257 Query 61442 ATTGGGCCTTCAATTGGAT 61460 |||||||| ||| ||| Sbjct 202256 CATGGGCCTTGCATTTGAT 202238 >seq131 Length=5549739 Score = 86.0 bits (94), Expect = 5e-12 Identities = 171/251 (68%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 61211 TGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCG 61269 |||| |||||||| || || || || | ||||| ||||| ||||| ||| || Sbjct 3232909 TGGCTTTCTTTGCAGCAAGTGATGGCATAGCAAATGAAAATTTGGTGGAATAATTTAGC- 3232967 Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || ||| | | || | | | |||||||| ||||||||| |||||| || || Sbjct 3232968 CAAGAAGTTCAAATTACAGAAGTGGGCTGTTTCTATGGCTTCCAGGTTGCCACAGAAAAC 3233027 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGT 61389 | || || | ||||| ||| | || || || || ||||| | || ||| | Sbjct 3233028 ATGCATTCTAAAATGTAGAGTCTCCTTATTGACACTTACATTAAAGATTCTAAAGAAAGG 3233087 Query 61390 GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCC 61449 ||| | | |||||| || || | ||| || |||||| ||||||| ||||||||| Sbjct 3233088 GAATTTCTCTCCAATGCTATTGAAAGGATGCCTTGTGTGAAGAGGAAAGCAGATTGGGCC 3233147 Query 61450 TTCAATTGGAT 61460 || | |||||| Sbjct 3233148 TTGAGTTGGAT 3233158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397507515371120