Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq30 116 3e-21
seq2 98.7 8e-16
seq536 95.1 1e-14
seq131 86.0 5e-12
>seq30
Length=14751797
Score = 116 bits (128), Expect = 3e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| |||||||| || ||||| ||||| |||| ||||| ||
Sbjct 830311 GGTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTG 830370
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| ||
Sbjct 830371 GTTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 830430
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 830431 AGACTCAATGATGGCATACCAAAG 830454
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || ||||| || ||||| || || |||| ||||| | ||||| |||||||| |
Sbjct 832099 CATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCGCTGCTCCTCCTT 832158
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || || || ||||||||||||||||| |||||| ||||||||||
Sbjct 832159 TCCTGTG-TTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGTTCCAGGT 832217
Query 66459 AGATGGCGAA 66468
| || || ||
Sbjct 832218 AAATAGCAAA 832227
>seq2
Length=46620681
Score = 98.7 bits (108), Expect = 8e-16
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || |||||||| || || || ||| ||| ||||||
Sbjct 41372728 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGTTTTCAAATTCTCATCGAGAAT 41372787
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || ||||| |||||||| ||
Sbjct 41372788 GTTCACTCAGAGATGTACAGTTTGCTAATAGATACTTACATCAGAGA 41372834
>seq536
Length=337149
Score = 95.1 bits (104), Expect = 1e-14
Identities = 290/439 (66%), Gaps = 12/439 (3%)
Strand=Plus/Minus
Query 61026 TGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGA 61085
|||||| ||| || ||||| || | || || || | || || || || | | |
Sbjct 202668 TGAACCACTACTGGGAGAGAGCCCCCACCGCTTGGTCATCTTTCCTATGGAACACCATGG 202609
Query 61086 TATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145
||| ||| |||| || || || || |||||||| ||||| | |||||||| | | |
Sbjct 202608 TATCCGGCAGATGTGTAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGCTCT 202549
Query 61146 GTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGC--GGTGAACAACATTTCATTAA 61202
|||| ||||| | ||||||| || | | ||| | |||||| |||| || |
Sbjct 202548 -TCCAGGGACATTCAGCACTGGGAAGCCCTGA---AGCCTGAGGAACAATATTTTAT-AT 202494
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| | |||| |||| ||| || || | || || || |||||||| |||| |
Sbjct 202493 CCACATTCTGGCTTTCTCTGCGGCAGGTGATAGCATAGTAAAGGAGAATTTGGTGGAGCC 202434
Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| || || || || ||| | | || || || ||||||| |||||||| |||||||
Sbjct 202433 ATTTAGC-CAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCTATGGCTTCCAAATTGCCA 202375
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
|||| || | || || || ||||| ||| |||| || || || || || | ||
Sbjct 202374 TGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTATATTAAAGACTTCA 202315
Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441
||| | ||| | |||||||||| || || || || |||||| ||||||
Sbjct 202314 AAGAAAGGGAATTTCTCTTCAATGCCACTGAAACAATGCCTTGTGTGAAGAAGAAAGC-- 202257
Query 61442 ATTGGGCCTTCAATTGGAT 61460
|||||||| ||| |||
Sbjct 202256 CATGGGCCTTGCATTTGAT 202238
>seq131
Length=5549739
Score = 86.0 bits (94), Expect = 5e-12
Identities = 171/251 (68%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 61211 TGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCG 61269
|||| |||||||| || || || || | ||||| ||||| ||||| ||| ||
Sbjct 3232909 TGGCTTTCTTTGCAGCAAGTGATGGCATAGCAAATGAAAATTTGGTGGAATAATTTAGC- 3232967
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|| || || ||| | | || | | | |||||||| ||||||||| |||||| || ||
Sbjct 3232968 CAAGAAGTTCAAATTACAGAAGTGGGCTGTTTCTATGGCTTCCAGGTTGCCACAGAAAAC 3233027
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGT 61389
| || || | ||||| ||| | || || || || ||||| | || ||| |
Sbjct 3233028 ATGCATTCTAAAATGTAGAGTCTCCTTATTGACACTTACATTAAAGATTCTAAAGAAAGG 3233087
Query 61390 GAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCC 61449
||| | | |||||| || || | ||| || |||||| ||||||| |||||||||
Sbjct 3233088 GAATTTCTCTCCAATGCTATTGAAAGGATGCCTTGTGTGAAGAGGAAAGCAGATTGGGCC 3233147
Query 61450 TTCAATTGGAT 61460
|| | ||||||
Sbjct 3233148 TTGAGTTGGAT 3233158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397507515371120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |