Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq11 141 4e-31 seq3 87.8 7e-15 seq134 86.0 3e-14 seq154 82.4 3e-13 >seq11 Length=44772304 Score = 141 bits (156), Expect = 4e-31 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 39650605 TTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGT 39650546 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 39650545 GGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 39650488 >seq3 Length=68754498 Score = 87.8 bits (96), Expect = 7e-15 Identities = 82/104 (79%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||||||||||||| | | ||||||||||||||||||||||||| | || | Sbjct 61540237 ATGGTGAACTATGCCTGGTCACG---AAGCCAGAGGAAACTCTGGTGGAGGTCTGTAGAG 61540293 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| | ||||||||| || || | | ||||||||||||| Sbjct 61540294 GTCCTGACATGCAAATCGGTCATCCGACCTAGGTATAGGGGCGA 61540337 >seq134 Length=5786112 Score = 86.0 bits (94), Expect = 3e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||| |||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 5061148 GTTAGGACCCTTAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 5061207 Query 625 TGGAG 629 ||||| Sbjct 5061208 TGGAG 5061212 >seq154 Length=3898418 Score = 82.4 bits (90), Expect = 3e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | ||| ||||| |||||||||| |||||||||| |||| |||| Sbjct 3346111 GAGCATGAGCACACGCGTTAGGACCGCAAAGATGGTGCACTATGCCTGGGCAGGGCGAAG 3346170 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATC 656 |||| || |||||||||||||| | ||||| | | ||||||||| Sbjct 3346171 CCAGGGGGAACTCTGGTGGAGGTCCATAGCGGCCCAGAAGTGCAAATC 3346218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079766237900