Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq45 91.5 2e-16 seq56 86.0 1e-14 seq180 82.4 1e-13 >seq45 Length=18186770 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||| || | |||||| | ||||| | || | || |||| || || | Sbjct 3101555 GTACAAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 3101498 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 3101497 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 3101444 >seq56 Length=15139244 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||||| | ||| | | || | || |||| || || | Sbjct 657906 GTACAAGAGGAACCGCAGT-TTCAGAC-ATTTGTTGTATGTGCTTGGCTGAGGAGCCAAT 657849 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 657848 GGGGAGAAGCTACCATTTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 657795 >seq180 Length=2192927 Score = 82.4 bits (90), Expect = 1e-13 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 399514 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 399456 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 |||||||| |||||||||||||||||||||| Sbjct 399455 GGGATTATGACTGAACGCCTCTAAGTCAGAAT 399424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819113513472