Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq76 167 7e-39 seq9 159 1e-36 seq24 127 6e-27 seq57 87.8 5e-15 seq17 87.8 5e-15 >seq76 Length=12571120 Score = 167 bits (184), Expect = 7e-39 Identities = 177/227 (78%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||| |||||||||| || | |||||| |||||| | |||| | |||||||||| Sbjct 6039233 ACTCATTGCAATTACAAGGCCTCGAAAGAGTACTGTATTATTATTCTTCATCACTACCTC 6039292 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| || ||| || ||| ||| | ||||||||||||||||||||||| ||| |||| Sbjct 6039293 CCCAGGTTGGGGGCTGGCAATATGCACACCTGCTGCCTTCCTTGGATGTGGAAGCTGTTT 6039352 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATT-CCCCGTTACCCGTTGATACCATGGTA 180 |||||| ||||||||| |||| |||||| ||| |||| | || ||| | || | |||| Sbjct 6039353 CTCAGGTTCCCTCTCCAGAAT-AAACCCTGATTCCCCCATCACACGTGGTCACTACGGTA 6039411 Query 181 GGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 ||| | ||| ||| || |||| |||| |||||||| ||| ||||| Sbjct 6039412 GGCACGGTAT-CTAGCACAGAAAATTGACAGGGCAGACATTCGAATG 6039457 >seq9 Length=48697558 Score = 159 bits (176), Expect = 1e-36 Identities = 128/153 (84%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||||||| |||| | || |||||||| ||||| | |||| |||| || |||||| Sbjct 33071348 CTCATTCCAAATACAGGGCCTCAAAAGAGTCCTGTGTTGTGATTTCTTGTTACCACCTCC 33071289 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| | ||||| || ||| |||| || | |||| |||||||||||||||||||| | ||| Sbjct 33071288 CCGGGGCGGGAGTGAGTACTTTGTGCTCTTGCTCCCTTCCTTGGATGTGGTAGCTGATTC 33071229 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 |||||||||||||||||||||||||||| |||| Sbjct 33071228 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTC 33071196 >seq24 Length=31839276 Score = 127 bits (140), Expect = 6e-27 Identities = 170/230 (74%), Gaps = 11/230 (5%) Strand=Plus/Plus Query 8 TTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 ||||||||||| | || |||||| | ||| || ||||||| |||||||||||| || Sbjct 7655806 TTCCAATTACAGGGCCTTGAAAGAGTCTTGTGTCTTTATTTATCATCACTACCTCCCAGT 7655865 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 | || | |||| |||||| | |||||||||| |||||||||||| | ||||||| Sbjct 7655866 TTAGG-AGTGGGAGATTTGCACACCTGCTGCCT-CCTTGGATGTGGATACAATTTCTCAA 7655923 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CA 185 ||| |||||| ||||| | |||| |||| || | | | | || ||||||| || Sbjct 7655924 GCTGGCTCTCCAGAATCAAGCCCTGATTC------ACTCATGGTCAACAAGGTAGGCACA 7655977 Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 | || |||| ||||||||| |||||| | | ||||||||| ||| || Sbjct 7655978 GT-GACTGCCATTGAAAGTTGAGAGGGCAAACACTTGAATGAATCATTGC 7656026 >seq57 Length=15126812 Score = 87.8 bits (96), Expect = 5e-15 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||| |||||| || | | |||||| ||||||| ||||| |||||||||||| Sbjct 13972604 ACTCATTCCCATTACAGAGCCTCGAAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTT 13972663 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTG 96 ||| ||||||| || |||||||||| ||||||| Sbjct 13972664 CCC-AGTCGGGAGTGAGTAATTTGCGGTCCTGCTG 13972697 >seq17 Length=36131260 Score = 87.8 bits (96), Expect = 5e-15 Identities = 104/136 (76%), Gaps = 14/136 (10%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAATAAA 402 |||||||||||||||||||||||||| |||||||| |||| | ||| | || || Sbjct 25689165 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGC-----AAGCAA 25689111 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGAC 461 | | | ||||||| | |||||||| |||| ||||| || ||| | ||||| || Sbjct 25689110 CCACAGCTGATTT-ACGAGCCATTTGCAGCTTCAC----CAGCCGTGC--ACACTTACAC 25689058 Query 462 ATGCATGGCTTAATCT 477 |||||||||||||||| Sbjct 25689057 ATGCATGGCTTAATCT 25689042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510235396608