Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq57 150 1e-31
seq56 95.1 1e-14
seq175 84.2 2e-11
>seq57
Length=15126812
Score = 150 bits (166), Expect = 1e-31
Identities = 585/905 (65%), Gaps = 22/905 (2%)
Strand=Plus/Plus
Query 61028 AACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATA 61087
|||| |||||| ||| || || | || || || | || || || | || | ||||
Sbjct 10749407 AACCATTATTGCGAGAAAAGCCCCTCCGCTTTGTTATCTTTCCTATGCAATAGCATGATA 10749466
Query 61088 TTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGT 61147
| |||| |||||||| || || || ||||||||||| | |||| ||| ||| | |
Sbjct 10749467 TCTGGCAGATGTACAAGAAAGCCAGGGCCTCCTTCTGGACAGCTGAGGTGGTAGATCTTT 10749526
Query 61148 CCAAAGACATGAATGACTGGGA-GCGTTTATCGAGC--GGTGAACAACAT--TTCATTAA 61202
|||| ||| | | ||||||| || | | ||| | ||| || || || ||
Sbjct 10749527 CCAAGGACGTTCAGCACTGGGAAGCCCTGA---AGCCTGAAGAAAAAGATACTTTATATC 10749583
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
| || |||| |||||||| || || ||||| || ||||| || | |||| ||
Sbjct 10749584 TCTCGTTCTGGCTTTCTTTGCTGCCAGTGATGGTATAGTAAATGAAAACATGGTGGAGCG 10749643
Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| || || || || ||| | | || || || |||||||| || ||||| |||||||
Sbjct 10749644 ATTTAGC-CAAGAAGTTCAAATTACAGAAGCCCGCTGTTTCTATGGGTTCCAAATTGCCA 10749702
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
|||| || | || || | |||||||||| | || || || | |||| | ||
Sbjct 10749703 TGGATAACATACATTCTGGGATGTACAGTCTCCTTATTGACATTTACACAAAAGATGTCA 10749762
Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441
||| | || | ||||||||||| || | ||| || ||||| || || |
Sbjct 10749763 AAGAAAGGGACTTCCTCTTCAATGCCATTGAAAGGATGCCTTGTATGAAG---AAGGCAG 10749819
Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501
| | || | |||||| || | |||||| | ||| |||| | | || |
Sbjct 10749820 ACGTGACCCTGTGTTGGATTGTGGATAAAGAGGCTACCTATGGAGAACATGTTGTAGCTT 10749879
Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561
|||| | | ||| | ||||| ||| || ||||| |||| |||||| | ||||
Sbjct 10749880 TTGCTGCTG-CGAAAGAAATCTTTTC--TGGTTCTTTTGCATCAATATTTTGGCTCAAGA 10749936
Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621
||| ||||| ||||| || || || || || |||| | || || || |||||
Sbjct 10749937 AACAGGGACTGATGCCTGGCCTCACATTTTCCAGTGAGCTTATTAGTCGAGATGAGGGTT 10749996
Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681
| ||| |||||||| | || | ||||| | | ||||| | || | |||
Sbjct 10749997 TACAT-GTGATTTTACCTGCCTGGTGTTCAAGCAC---CTGGTATACAAACCATTAGAGT 10750052
Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741
|| | || || || || | || || | || ||| |||| || || || || |
Sbjct 10750053 AGTGAGTCAAGGAAATAATTGTCAATGCTGTCAGAATAGAAGAGGAGTTCCTCACAGAGG 10750112
Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801
| ||||| || |||| || |||||||| ||||| |||| | ||||||||||
Sbjct 10750113 CCTTGCCTGTGAAGTTCATTGGAATGAATTGCACTTTAATGAAGCAGAACATTGAATTTG 10750172
Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGA-AAAACCCA 61860
| || ||| | || || | || ||||| | || ||| | | | | | ||||||||
Sbjct 10750173 TGGCAGACAGGCTTATGCTGGAAATGGGTTTTAACAAGATTT-TCAGAGTAGAAAACCCA 10750231
Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTA 61920
||||| |||||||| || ||||| || || || ||||| || || | ||||| | |||
Sbjct 10750232 TTTGACTTCATGGAGATTATTTCACTAGAAGGAAAGACTAACTTCTCTGAGAAGAGAGTA 10750291
Query 61921 GGCGA 61925
|| ||
Sbjct 10750292 GGTGA 10750296
>seq56
Length=15139244
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || |||||||| ||||| |||||| ||||||||||
Sbjct 9258098 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAGATTCTCATGGAGAAT 9258157
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| ||||||||||| | || || || || || || || ||
Sbjct 9258158 GTTCACTCAGAGATGTACAGCTTGCTGATAGACACTTATATTAGAGA 9258204
>seq175
Length=2612143
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 61271 AGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330
|||| ||||| || || ||||| | |||||||| ||||| ||||| |||||||||||
Sbjct 1473172 AGGACGTGCACGTTTCAGAGGCTCACTGTTTCTATGGCTTTTAGATTTTCATGGAGAATG 1473231
Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
||||| ||||| ||||| | || || ||| | |||||||| ||
Sbjct 1473232 CTCACTCAGAGATATACAGCTTACTGATAGATGCTTACATCAGAGA 1473277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397515195266720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |