Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq57 150 1e-31 seq56 95.1 1e-14 seq175 84.2 2e-11 >seq57 Length=15126812 Score = 150 bits (166), Expect = 1e-31 Identities = 585/905 (65%), Gaps = 22/905 (2%) Strand=Plus/Plus Query 61028 AACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATA 61087 |||| |||||| ||| || || | || || || | || || || | || | |||| Sbjct 10749407 AACCATTATTGCGAGAAAAGCCCCTCCGCTTTGTTATCTTTCCTATGCAATAGCATGATA 10749466 Query 61088 TTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGT 61147 | |||| |||||||| || || || ||||||||||| | |||| ||| ||| | | Sbjct 10749467 TCTGGCAGATGTACAAGAAAGCCAGGGCCTCCTTCTGGACAGCTGAGGTGGTAGATCTTT 10749526 Query 61148 CCAAAGACATGAATGACTGGGA-GCGTTTATCGAGC--GGTGAACAACAT--TTCATTAA 61202 |||| ||| | | ||||||| || | | ||| | ||| || || || || Sbjct 10749527 CCAAGGACGTTCAGCACTGGGAAGCCCTGA---AGCCTGAAGAAAAAGATACTTTATATC 10749583 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 | || |||| |||||||| || || ||||| || ||||| || | |||| || Sbjct 10749584 TCTCGTTCTGGCTTTCTTTGCTGCCAGTGATGGTATAGTAAATGAAAACATGGTGGAGCG 10749643 Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || || || || ||| | | || || || |||||||| || ||||| ||||||| Sbjct 10749644 ATTTAGC-CAAGAAGTTCAAATTACAGAAGCCCGCTGTTTCTATGGGTTCCAAATTGCCA 10749702 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || | || || | |||||||||| | || || || | |||| | || Sbjct 10749703 TGGATAACATACATTCTGGGATGTACAGTCTCCTTATTGACATTTACACAAAAGATGTCA 10749762 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | || | ||||||||||| || | ||| || ||||| || || | Sbjct 10749763 AAGAAAGGGACTTCCTCTTCAATGCCATTGAAAGGATGCCTTGTATGAAG---AAGGCAG 10749819 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 | | || | |||||| || | |||||| | ||| |||| | | || | Sbjct 10749820 ACGTGACCCTGTGTTGGATTGTGGATAAAGAGGCTACCTATGGAGAACATGTTGTAGCTT 10749879 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | | ||| | ||||| ||| || ||||| |||| |||||| | |||| Sbjct 10749880 TTGCTGCTG-CGAAAGAAATCTTTTC--TGGTTCTTTTGCATCAATATTTTGGCTCAAGA 10749936 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 ||| ||||| ||||| || || || || || |||| | || || || ||||| Sbjct 10749937 AACAGGGACTGATGCCTGGCCTCACATTTTCCAGTGAGCTTATTAGTCGAGATGAGGGTT 10749996 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 | ||| |||||||| | || | ||||| | | ||||| | || | ||| Sbjct 10749997 TACAT-GTGATTTTACCTGCCTGGTGTTCAAGCAC---CTGGTATACAAACCATTAGAGT 10750052 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 || | || || || || | || || | || ||| |||| || || || || | Sbjct 10750053 AGTGAGTCAAGGAAATAATTGTCAATGCTGTCAGAATAGAAGAGGAGTTCCTCACAGAGG 10750112 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | ||||| || |||| || |||||||| ||||| |||| | |||||||||| Sbjct 10750113 CCTTGCCTGTGAAGTTCATTGGAATGAATTGCACTTTAATGAAGCAGAACATTGAATTTG 10750172 Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGA-AAAACCCA 61860 | || ||| | || || | || ||||| | || ||| | | | | | |||||||| Sbjct 10750173 TGGCAGACAGGCTTATGCTGGAAATGGGTTTTAACAAGATTT-TCAGAGTAGAAAACCCA 10750231 Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTA 61920 ||||| |||||||| || ||||| || || || ||||| || || | ||||| | ||| Sbjct 10750232 TTTGACTTCATGGAGATTATTTCACTAGAAGGAAAGACTAACTTCTCTGAGAAGAGAGTA 10750291 Query 61921 GGCGA 61925 || || Sbjct 10750292 GGTGA 10750296 >seq56 Length=15139244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| |||||| |||||||||| Sbjct 9258098 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAGATTCTCATGGAGAAT 9258157 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| ||||||||||| | || || || || || || || || Sbjct 9258158 GTTCACTCAGAGATGTACAGCTTGCTGATAGACACTTATATTAGAGA 9258204 >seq175 Length=2612143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 61271 AGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330 |||| ||||| || || ||||| | |||||||| ||||| ||||| ||||||||||| Sbjct 1473172 AGGACGTGCACGTTTCAGAGGCTCACTGTTTCTATGGCTTTTAGATTTTCATGGAGAATG 1473231 Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||| ||||| ||||| | || || ||| | |||||||| || Sbjct 1473232 CTCACTCAGAGATATACAGCTTACTGATAGATGCTTACATCAGAGA 1473277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397515195266720