Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11-
20] 14,543 sequences; 2,510,587,379 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq1479 161 6e-38
seq107 95.1 7e-18
>seq1479
Length=6407
Score = 161 bits (178), Expect = 6e-38
Identities = 106/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||||||||||||||||||||||| | |||| | | |||| | |||
Sbjct 5937 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGTGGGTCATTAAAAAAACACCACCC 5996
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 5997 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCATCTTCGA 6053
>seq107
Length=3634241
Score = 95.1 bits (104), Expect = 7e-18
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||| |||| || ||| |||| |||| |||| |||||| |||
Sbjct 176 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCAGCGGGTCATGGGAATAACACCGCTG 235
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||| | |||| |||| ||||| ||| ||||||||||||||||| |||||| ||
Sbjct 236 CATCACCAGTCAGCATCGTTTATGGTCGGAACTACGACGGTATCTGACCGTCTTTGA 292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278362042770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |