Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11-
20] 14,543 sequences; 2,510,587,379 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq1479 379 4e-103
seq107 158 2e-36
>seq1479
Length=6407
Score = 379 bits (420), Expect = 4e-103
Identities = 270/305 (89%), Gaps = 6/305 (2%)
Strand=Plus/Minus
Query 15 GGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTT 74
|||||||||||||||| | || | |||| ||| | | || || |||||||||
Sbjct 6354 GGGCCTTTCCTTCTGGCTAACCTTGAGTCCTTG--TGGCTCTT--GGCGAACCAGGACTT 6299
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGA 133
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 6298 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGAATATATTAGCATGGA 6239
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 6238 ATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACCATCGTAATGATTAA 6179
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 6178 TAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 6119
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||
Sbjct 6118 AGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCA-AGAACGAAAGTT 6060
Query 314 AGGGG 318
|||||
Sbjct 6059 AGGGG 6055
>seq107
Length=3634241
Score = 158 bits (174), Expect = 2e-36
Identities = 206/279 (74%), Gaps = 7/279 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 576 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 517
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAAT-AGGACGTGCG 153
|||||||||||| || | ||| ||| |||||||| |||| ||||| |||
Sbjct 516 TCAAAGCAGGCCCGAGCCGCCTGGCTACCGCAGCTAGGAATAATGGAATTAGGACC-GCG 458
Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213
|||||||||||||||||| | || | | |||||||| ||||| | |||||| |
Sbjct 457 GTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATT 398
Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273
||||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 397 TGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGC 338
Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| |||| |||||||||||||||| ||||||||||
Sbjct 337 ATTTGCCAATAATGTTTTCATTAATCA-AGAACGAAAGT 300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915066902464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |