Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11-
20] 14,543 sequences; 2,510,587,379 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq1479 668 0.0
seq2305 149 3e-33
seq18 105 3e-20
seq74 102 3e-19
seq1 87.8 7e-15
seq150 78.8 4e-12
seq8 77.0 1e-11
>seq1479
Length=6407
Score = 668 bits (740), Expect = 0.0
Identities = 556/670 (83%), Gaps = 15/670 (2%)
Strand=Plus/Minus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||| ||| ||||||| |||||||||||||||||||||||||||||| |||| |||||||
Sbjct 4241 TGTAAAGTGCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAAT 4182
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
| | ||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||
Sbjct 4181 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 4122
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || |
Sbjct 4121 TGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCAT 4062
Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCG--GTGCACTCTTCTGCG 260
| ||||| || ||| | | || ||| | | | | | ||| |
Sbjct 4061 TTGATCAGACATGGTGTTTTGTGCCCT--CTGCTCCTTGTGGGTAGGGGAATCT-CGCAT 4005
Query 261 GTCA---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317
||| |||||||||||| | || || ||||||| || ||||||| || | |
Sbjct 4004 TTCACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAT-CCATAGGAATGTAGCTTGCCT 3946
Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCC 375
||| || |||||||| | || |||| | ||| || ||||||||| | ||| |
Sbjct 3945 CGGTAAGTATTATAGCCTGTGG--GAATACTGCCAGCTGGGACTGAGGACTGCGACGTAA 3888
Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435
| | ||||||||||| |||||||| || || |||||||||| ||||||||||||||||||
Sbjct 3887 GTCAAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTC 3828
Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495
|||| ||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||
Sbjct 3827 TAACGTCTATGCGAGTGTTTGGGTGTAAAACCCATACGCGTAATGAAAGTGAACGTAGGT 3768
Query 496 GGGAACC-CGTGAG-GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 553
|| || || || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3767 TGGGGCCTCGCAAGAGGTGCACAATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 3708
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3707 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 3648
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 3647 GGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGT 3588
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 3587 ATAGGGGCGA 3578
>seq2305
Length=4908
Score = 149 bits (164), Expect = 3e-33
Identities = 105/120 (88%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1017 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 958
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 957 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 898
Score = 122 bits (134), Expect = 4e-25
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 2126 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 2067
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 2066 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 2007
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| ||| | ||| || ||
Sbjct 2006 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 1967
>seq18
Length=40650429
Score = 105 bits (116), Expect = 3e-20
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||| || ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 35589308 TGTTAGGACCCCAACAATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 35589367
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
||||||| | |||||| ||| ||||||||||| | ||| | | ||||| |||
Sbjct 35589368 GTGGAGGTCCATAGCGGTCCTGACGTGCAAATCGGTAGTCCGACCTAGGTATGGGG 35589423
>seq74
Length=8695336
Score = 102 bits (112), Expect = 3e-19
Identities = 106/138 (77%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 45 GAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGG 104
|||||| ||||||||||||| | || ||| |||||| | | ||||| |||||||| |||
Sbjct 4889429 GAGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACTGG 4889370
Query 105 CCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGA 164
| ||||| |||| ||||||| | | ||||| ||||||| |||||| | |||||
Sbjct 4889369 CGCAAGACC-ATAGTCAACAAGTACCCTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGA 4889311
Query 165 GTTAAAAAGCACGTGAAA 182
||| || || |||||||
Sbjct 4889310 GTTCAAGAGGGCGTGAAA 4889293
>seq1
Length=90267253
Score = 87.8 bits (96), Expect = 7e-15
Identities = 112/154 (73%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| | || || |||||| | | ||||| |||||||
Sbjct 22070149 GAGTCCGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 22070090
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||| |||| ||||||| | | ||||| ||||||| ||||||
Sbjct 22070089 ACCGGCTCTAGACCTATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTG--- 22070033
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193
||||||| || || |||||| |||| | |||
Sbjct 22070032 -GAGAGTTCAAGAGGGTGTGAAACTGTTAAGAGG 22070000
>seq150
Length=1039864
Score = 78.8 bits (86), Expect = 4e-12
Identities = 70/88 (80%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
||||| |||||||| | || |||||||| | ||| ||||||| ||||||||||||||
Sbjct 923917 GGACCTGAAAGATGATCAATTATGCCTGGACAGGCCAAAGCCAGGAGAAACTCTGGTGGA 923858
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATC 656
|| || || ||| ||| | ||||||||
Sbjct 923857 GGTCCGTAGGGGTCCTGACATGCAAATC 923830
>seq8
Length=54407132
Score = 77.0 bits (84), Expect = 1e-11
Identities = 88/117 (75%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||| ||||||||||||| | || ||| |||||| | | ||||| || ||||
Sbjct 51892233 GAGTCGGATTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCAAAAT 51892292
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156
| |||| ||||||| ||| ||||||| || | | ||| | ||||| ||||||
Sbjct 51892293 ACTGGCACGAGACCGGTAGTCAACAAGTACCGT-AAGGGAAGTTAAAAAGAACTTTG 51892348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079688052650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |