Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1479 668 0.0 seq2305 149 3e-33 seq18 105 3e-20 seq74 102 3e-19 seq1 87.8 7e-15 seq150 78.8 4e-12 seq8 77.0 1e-11 >seq1479 Length=6407 Score = 668 bits (740), Expect = 0.0 Identities = 556/670 (83%), Gaps = 15/670 (2%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||| Sbjct 4241 TGTAAAGTGCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAAT 4182 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 4181 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 4122 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 4121 TGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCAT 4062 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCG--GTGCACTCTTCTGCG 260 | ||||| || ||| | | || ||| | | | | | ||| | Sbjct 4061 TTGATCAGACATGGTGTTTTGTGCCCT--CTGCTCCTTGTGGGTAGGGGAATCT-CGCAT 4005 Query 261 GTCA---GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTT 317 ||| |||||||||||| | || || ||||||| || ||||||| || | | Sbjct 4004 TTCACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAT-CCATAGGAATGTAGCTTGCCT 3946 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCC 375 ||| || |||||||| | || |||| | ||| || ||||||||| | ||| | Sbjct 3945 CGGTAAGTATTATAGCCTGTGG--GAATACTGCCAGCTGGGACTGAGGACTGCGACGTAA 3888 Query 376 GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTC 435 | | ||||||||||| |||||||| || || |||||||||| |||||||||||||||||| Sbjct 3887 GTCAAGGATGCTGGCATAATGGTTATATGCCGCCCGTCTTGAAACACGGACCAAGGAGTC 3828 Query 436 TAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGT 495 |||| ||||||||||||||||||||| |||||| | ||||||||||||||||||| |||| Sbjct 3827 TAACGTCTATGCGAGTGTTTGGGTGTAAAACCCATACGCGTAATGAAAGTGAACGTAGGT 3768 Query 496 GGGAACC-CGTGAG-GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 553 || || || || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 3767 TGGGGCCTCGCAAGAGGTGCACAATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA 3708 Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3707 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 3648 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| Sbjct 3647 GGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAATTTGGGT 3588 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 3587 ATAGGGGCGA 3578 >seq2305 Length=4908 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 1017 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 958 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 957 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 898 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 2126 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 2067 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 2066 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 2007 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 2006 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 1967 >seq18 Length=40650429 Score = 105 bits (116), Expect = 3e-20 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| || ||||||||||||||||| |||| |||||||||||||||||| Sbjct 35589308 TGTTAGGACCCCAACAATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 35589367 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||||| | |||||| ||| ||||||||||| | ||| | | ||||| ||| Sbjct 35589368 GTGGAGGTCCATAGCGGTCCTGACGTGCAAATCGGTAGTCCGACCTAGGTATGGGG 35589423 >seq74 Length=8695336 Score = 102 bits (112), Expect = 3e-19 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 45 GAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGG 104 |||||| ||||||||||||| | || ||| |||||| | | ||||| |||||||| ||| Sbjct 4889429 GAGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACTGG 4889370 Query 105 CCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGA 164 | ||||| |||| ||||||| | | ||||| ||||||| |||||| | ||||| Sbjct 4889369 CGCAAGACC-ATAGTCAACAAGTACCCTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGA 4889311 Query 165 GTTAAAAAGCACGTGAAA 182 ||| || || ||||||| Sbjct 4889310 GTTCAAGAGGGCGTGAAA 4889293 >seq1 Length=90267253 Score = 87.8 bits (96), Expect = 7e-15 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 22070149 GAGTCCGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 22070090 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| |||| ||||||| | | ||||| ||||||| |||||| Sbjct 22070089 ACCGGCTCTAGACCTATAGTCAACAAGTACCATAAGGGAAAGTTGAAAAGAACTTTG--- 22070033 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||| || || |||||| |||| | ||| Sbjct 22070032 -GAGAGTTCAAGAGGGTGTGAAACTGTTAAGAGG 22070000 >seq150 Length=1039864 Score = 78.8 bits (86), Expect = 4e-12 Identities = 70/88 (80%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| |||||||| | || |||||||| | ||| ||||||| |||||||||||||| Sbjct 923917 GGACCTGAAAGATGATCAATTATGCCTGGACAGGCCAAAGCCAGGAGAAACTCTGGTGGA 923858 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATC 656 || || || ||| ||| | |||||||| Sbjct 923857 GGTCCGTAGGGGTCCTGACATGCAAATC 923830 >seq8 Length=54407132 Score = 77.0 bits (84), Expect = 1e-11 Identities = 88/117 (75%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||||||||| | || ||| |||||| | | ||||| || |||| Sbjct 51892233 GAGTCGGATTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCAAAAT 51892292 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | |||| ||||||| ||| ||||||| || | | ||| | ||||| |||||| Sbjct 51892293 ACTGGCACGAGACCGGTAGTCAACAAGTACCGT-AAGGGAAGTTAAAAAGAACTTTG 51892348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079688052650