Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq2305 176 2e-42 seq1 109 3e-22 seq5 100 1e-19 >seq2305 Length=4908 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2347 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 2288 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||| ||||||||||||||| |||||||||| Sbjct 2287 CCGAATCCCCGCCCCTCGGTGGGGCGCGGGAAATGTGGCGTA 2246 >seq1 Length=90267253 Score = 109 bits (120), Expect = 3e-22 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 17 AGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCG 76 ||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||| |||| Sbjct 22070356 AGGATTCCCTCAGTAACTGCGAGTAAACAGGGAAGAGCCCAGTGCCAAATCCCCACCCCT 22070297 Query 77 CGGTGGGGCGCGGGACATGTGGC 99 | ||||||| ||||| ||||||| Sbjct 22070296 CAGTGGGGCACGGGAAATGTGGC 22070274 >seq5 Length=64221397 Score = 100 bits (110), Expect = 1e-19 Identities = 62/65 (95%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 57584263 GGAAAAGAAACTAAC-AGGATTCCCTCAGTAAGGGCAAGTGAACAGGGAAGAGCCCAGCG 57584205 Query 61 CCGAA 65 ||||| Sbjct 57584204 CCGAA 57584200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230368587120