Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11-
20] 14,543 sequences; 2,510,587,379 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1479 325 6e-87
seq4 98.7 2e-18
seq14 93.3 7e-17
>seq1479
Length=6407
Score = 325 bits (360), Expect = 6e-87
Identities = 230/260 (88%), Gaps = 6/260 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 5553 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 5612
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---A 118
|||||||||||||||||||||||| |||| ||| || ||||||||||||||||| |
Sbjct 5613 CCTGTTATTGCCTCAAACTTCCATCGGCTTGAAACCGATAGTCCCTCTAAGAAGTGGATA 5672
Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
||| ||| || | | |||||||| |||||||||||||||||||||||| |||
Sbjct 5673 ACCAGCAA--ATGCTAGCACCA-CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAAT 5729
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 5730 TAAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAA 5789
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||||||||||
Sbjct 5790 GAAAGAGCTCTCAATCTGTC 5809
>seq4
Length=67649338
Score = 98.7 bits (108), Expect = 2e-18
Identities = 161/228 (71%), Gaps = 12/228 (5%)
Strand=Plus/Plus
Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98
|||||| | ||||||||||| ||| | ||||||| ||| || || ||||||| ||||
Sbjct 19742934 AGAACAGC-AAGGGCATCACGGACATTTTATTGC-TCATTCTCAGAT-GGCTGGATGCCA 19742990
Query 99 ATAGTCCCTCTAAGAAGCCAGCC-ACCAACCATAGTCGATGGGGCT--------ATTTAG 149
| |||||| ||||||| || || | | | | |||| | | |||
Sbjct 19742991 TTTGTCCCTGTAAGAAGTTAGAGGACGCAGTCTGCTTGTGGGGGTTGCATAAGTAGTTAA 19743050
Query 150 CAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209
|| | || ||||| | ||||| ||| |||||||| | || ||||| ||||||||||
Sbjct 19743051 CATGCTAGAGTCTCAATTGTTATGGGAGTTAACCAGGTAGATTGCTCCATCAACTAAGAA 19743110
Query 210 CGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
| ||||| | || || |||| |||| |||||| |||||||||||||
Sbjct 19743111 GGTCCATGTATCATCATCCATGGAATTGAGAAAGGGCTATCAATCTGT 19743158
>seq14
Length=48072881
Score = 93.3 bits (102), Expect = 7e-17
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257
||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 3458207 ACCAACTGAGAACGGCCATGCACCACCACCCACGGAATCCAGAAAGAGCTATCAATCTGT 3458266
Query 258 C 258
|
Sbjct 3458267 C 3458267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796687742583
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |