Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1479 325 6e-87 seq4 98.7 2e-18 seq14 93.3 7e-17 >seq1479 Length=6407 Score = 325 bits (360), Expect = 6e-87 Identities = 230/260 (88%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 5553 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 5612 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---A 118 |||||||||||||||||||||||| |||| ||| || ||||||||||||||||| | Sbjct 5613 CCTGTTATTGCCTCAAACTTCCATCGGCTTGAAACCGATAGTCCCTCTAAGAAGTGGATA 5672 Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 ||| ||| || | | |||||||| |||||||||||||||||||||||| ||| Sbjct 5673 ACCAGCAA--ATGCTAGCACCA-CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAAT 5729 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 5730 TAAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAA 5789 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 5790 GAAAGAGCTCTCAATCTGTC 5809 >seq4 Length=67649338 Score = 98.7 bits (108), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 39 AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA 98 |||||| | ||||||||||| ||| | ||||||| ||| || || ||||||| |||| Sbjct 19742934 AGAACAGC-AAGGGCATCACGGACATTTTATTGC-TCATTCTCAGAT-GGCTGGATGCCA 19742990 Query 99 ATAGTCCCTCTAAGAAGCCAGCC-ACCAACCATAGTCGATGGGGCT--------ATTTAG 149 | |||||| ||||||| || || | | | | |||| | | ||| Sbjct 19742991 TTTGTCCCTGTAAGAAGTTAGAGGACGCAGTCTGCTTGTGGGGGTTGCATAAGTAGTTAA 19743050 Query 150 CAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209 || | || ||||| | ||||| ||| |||||||| | || ||||| |||||||||| Sbjct 19743051 CATGCTAGAGTCTCAATTGTTATGGGAGTTAACCAGGTAGATTGCTCCATCAACTAAGAA 19743110 Query 210 CGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 | ||||| | || || |||| |||| |||||| ||||||||||||| Sbjct 19743111 GGTCCATGTATCATCATCCATGGAATTGAGAAAGGGCTATCAATCTGT 19743158 >seq14 Length=48072881 Score = 93.3 bits (102), Expect = 7e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 3458207 ACCAACTGAGAACGGCCATGCACCACCACCCACGGAATCCAGAAAGAGCTATCAATCTGT 3458266 Query 258 C 258 | Sbjct 3458267 C 3458267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796687742583