Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1479 470 3e-130 seq85 251 1e-64 seq13 242 6e-62 seq18 217 3e-54 seq80 140 6e-31 seq8 95.1 2e-17 >seq1479 Length=6407 Score = 470 bits (520), Expect = 3e-130 Identities = 281/295 (95%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| |||||| |||| || || |||||||||||||||||||||||||||||| Sbjct 1467 TACTAAGTTCAATTACTATTGCGGTAACATTCATCAGTAGGGTAAAACTAACCTGTCTCA 1526 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1527 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 1586 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1587 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAATGTCGCTAT 1646 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1647 GAACGCTTGACTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 1706 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1707 CAAATTCCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 1761 >seq85 Length=7583739 Score = 251 bits (278), Expect = 1e-64 Identities = 165/182 (91%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13744 CCTGTCTCACAACTGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 13803 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| ||||||||||||||| ||||||||||||||||||| || Sbjct 13804 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGAAA 13863 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 | || |||||||| |||||||||||||||||||||||||| ||||||||||||||| || Sbjct 13864 CATCACTATGAACACTTGGCTGCCACAAGCCAGTTATCCCCGTGGTAACTTTTCTGACAA 13923 Query 232 CT 233 || Sbjct 13924 CT 13925 >seq13 Length=48154242 Score = 242 bits (268), Expect = 6e-62 Identities = 187/222 (84%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 13022931 AACCCAGCTCATGTTCCCTACTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTC 13022872 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 ||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||| Sbjct 13022871 ACAATGATAGGAAGAGAAGACATCGAAGGATCAAAAAGCGAGGTCGCTATGAATGCTTGG 13022812 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 |||||||||||| |||||||||||||||||||||||| |||||| || | ||| | Sbjct 13022811 CTGCCACAAGCCGGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAA 13022752 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 || | |||||||| ||||| | |||||| ||| | |||| Sbjct 13022751 AGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTATATT 13022710 >seq18 Length=40650429 Score = 217 bits (240), Expect = 3e-54 Identities = 144/160 (90%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 24544262 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCATGTTCCCTA 24544321 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| Sbjct 24544322 GTAGTGGGTGAACAATCCAACCCTTGATGAATTCTGCTTCACAATGATAGGAAGAGCCGA 24544381 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 ||| |||||||| ||||| || | ||||||||||||||| Sbjct 24544382 TATCAAAGGATCAGAAAGCCACATGGCTATGAACGCTTGG 24544421 >seq80 Length=7751663 Score = 140 bits (154), Expect = 6e-31 Identities = 142/183 (78%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || |||||||||||||||||| |||||| | | | | |||||||| Sbjct 5434789 CCTGTCTCACGATGGTCTAAACCCAGCTCACATTCCCTGTCACTAGACACACAATCCAGT 5434848 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 | || | ||||||||| | ||| ||||||||| ||| | | | ||||| || | Sbjct 5434849 GGTTGACAAATTCTGCTGCACATTGAAAGGAAGAGCAGACGGCTA--GGTCAAACAGTGA 5434906 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 | | |||||||||||||||||||| |||||| |||||||||||| ||||| |||| ||| Sbjct 5434907 CAGCTCTATGAACGCTTGGCTGCCATAAGCCACTTATCCCTGTGG-AACTTCTCTGACAC 5434965 Query 232 CTC 234 ||| Sbjct 5434966 CTC 5434968 >seq8 Length=54407132 Score = 95.1 bits (104), Expect = 2e-17 Identities = 190/283 (67%), Gaps = 49/283 (17%) Strand=Plus/Minus Query 12 ATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 |||||||| ||| || || ||||||||| |||||||||| |||| || || || Sbjct 33676237 ATTACCAT---GGCAACATGTTATCAGTAGGATAAAACTAAC-----TCATAACAGTTTA 33676186 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||| | ||| |||||||||||||||||||||||| Sbjct 33676185 AACCAGGTTCATGTTCCCTATTAGTGGGTGAACAAT------------------------ 33676150 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 |||| ||| | | |||| || ||||||||| || || ||||| | ||| || Sbjct 33676149 -----GATAAGAATAATCTACATTGAGGGATCAAAAGAGAAAGTTACTATGCATGCT-GG 33676096 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 |||||||| ||||||| || | ||||| ||| |||||| || | ||| ||| Sbjct 33676095 CTGCCACA-GCCAGTTCTCTC-------ACTTTCCTGATACCTCTTGCTT-AAACCCCGA 33676045 Query 251 GGGACTA-AAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 ||| | ||||||| | |||||||||||||||| |||||| Sbjct 33676044 AAGACCAGAAGGATCATGATGCCACACTTTCATGGTCTGTATT 33676002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854275744608