Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11-
20] 14,543 sequences; 2,510,587,379 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1479 470 3e-130
seq85 251 1e-64
seq13 242 6e-62
seq18 217 3e-54
seq80 140 6e-31
seq8 95.1 2e-17
>seq1479
Length=6407
Score = 470 bits (520), Expect = 3e-130
Identities = 281/295 (95%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||||| |||||| |||| || || ||||||||||||||||||||||||||||||
Sbjct 1467 TACTAAGTTCAATTACTATTGCGGTAACATTCATCAGTAGGGTAAAACTAACCTGTCTCA 1526
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 1586
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1587 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAATGTCGCTAT 1646
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 GAACGCTTGACTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 1706
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 CAAATTCCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 1761
>seq85
Length=7583739
Score = 251 bits (278), Expect = 1e-64
Identities = 165/182 (91%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13744 CCTGTCTCACAACTGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 13803
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||||||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 13804 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATCAAAAAGAAA 13863
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
| || |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 13864 CATCACTATGAACACTTGGCTGCCACAAGCCAGTTATCCCCGTGGTAACTTTTCTGACAA 13923
Query 232 CT 233
||
Sbjct 13924 CT 13925
>seq13
Length=48154242
Score = 242 bits (268), Expect = 6e-62
Identities = 187/222 (84%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 13022931 AACCCAGCTCATGTTCCCTACTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTC 13022872
Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190
||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 13022871 ACAATGATAGGAAGAGAAGACATCGAAGGATCAAAAAGCGAGGTCGCTATGAATGCTTGG 13022812
Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250
|||||||||||| |||||||||||||||||||||||| |||||| || | ||| |
Sbjct 13022811 CTGCCACAAGCCGGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAA 13022752
Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
|| | |||||||| ||||| | |||||| ||| | ||||
Sbjct 13022751 AGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTATATT 13022710
>seq18
Length=40650429
Score = 217 bits (240), Expect = 3e-54
Identities = 144/160 (90%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 24544262 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCATGTTCCCTA 24544321
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||||||| ||| |||||||||||| |||||||||||||||||
Sbjct 24544322 GTAGTGGGTGAACAATCCAACCCTTGATGAATTCTGCTTCACAATGATAGGAAGAGCCGA 24544381
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190
||| |||||||| ||||| || | |||||||||||||||
Sbjct 24544382 TATCAAAGGATCAGAAAGCCACATGGCTATGAACGCTTGG 24544421
>seq80
Length=7751663
Score = 140 bits (154), Expect = 6e-31
Identities = 142/183 (78%), Gaps = 3/183 (2%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || |||||||||||||||||| |||||| | | | | ||||||||
Sbjct 5434789 CCTGTCTCACGATGGTCTAAACCCAGCTCACATTCCCTGTCACTAGACACACAATCCAGT 5434848
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
| || | ||||||||| | ||| ||||||||| ||| | | | ||||| || |
Sbjct 5434849 GGTTGACAAATTCTGCTGCACATTGAAAGGAAGAGCAGACGGCTA--GGTCAAACAGTGA 5434906
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
| | |||||||||||||||||||| |||||| |||||||||||| ||||| |||| |||
Sbjct 5434907 CAGCTCTATGAACGCTTGGCTGCCATAAGCCACTTATCCCTGTGG-AACTTCTCTGACAC 5434965
Query 232 CTC 234
|||
Sbjct 5434966 CTC 5434968
>seq8
Length=54407132
Score = 95.1 bits (104), Expect = 2e-17
Identities = 190/283 (67%), Gaps = 49/283 (17%)
Strand=Plus/Minus
Query 12 ATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70
|||||||| ||| || || ||||||||| |||||||||| |||| || || ||
Sbjct 33676237 ATTACCAT---GGCAACATGTTATCAGTAGGATAAAACTAAC-----TCATAACAGTTTA 33676186
Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
|||| | ||| ||||||||||||||||||||||||
Sbjct 33676185 AACCAGGTTCATGTTCCCTATTAGTGGGTGAACAAT------------------------ 33676150
Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190
|||| ||| | | |||| || ||||||||| || || ||||| | ||| ||
Sbjct 33676149 -----GATAAGAATAATCTACATTGAGGGATCAAAAGAGAAAGTTACTATGCATGCT-GG 33676096
Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250
|||||||| ||||||| || | ||||| ||| |||||| || | ||| |||
Sbjct 33676095 CTGCCACA-GCCAGTTCTCTC-------ACTTTCCTGATACCTCTTGCTT-AAACCCCGA 33676045
Query 251 GGGACTA-AAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
||| | ||||||| | |||||||||||||||| ||||||
Sbjct 33676044 AAGACCAGAAGGATCATGATGCCACACTTTCATGGTCTGTATT 33676002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854275744608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |