Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1479 782 0.0 seq28 459 9e-127 seq18 306 1e-80 seq96 163 9e-38 seq7 163 9e-38 seq24 158 4e-36 seq15 123 8e-26 seq75 105 2e-20 seq3 80.6 9e-13 >seq1479 Length=6407 Score = 782 bits (866), Expect = 0.0 Identities = 502/541 (93%), Gaps = 9/541 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1793 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACATCTGCGTTATC 1852 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1853 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 1912 Query 127 GGCCCGCGAA--GGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 |||| |||| ||||||| || || |||| ||| |||| |||| |||||||||| Sbjct 1913 AGCCC-CGAATGGGACCTTGAATGCTAGAACGTGGAAAATGAATTCCAGCTCCGCTTCAT 1971 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 ||| |||||||| |||| |||| ||||||||||||||||| |||||||| |||||||| Sbjct 1972 TGAATAAGTAAAGAAACTATAAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 2028 Query 244 TTATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||||||||| ||||| | ||| ||||||| ||| ||||||||||||||||||||||| Sbjct 2029 TTATTCTACACCCTCT-ATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGT 2087 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2088 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 2147 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2148 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 2207 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2208 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 2267 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2268 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 2327 Query 543 G 543 | Sbjct 2328 G 2328 >seq28 Length=30259031 Score = 459 bits (508), Expect = 9e-127 Identities = 280/297 (94%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 7558555 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 7558496 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 7558495 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 7558436 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||| Sbjct 7558435 ATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGCTCGTCACTAATTAGATG 7558376 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7558375 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 7558316 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 7558315 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCACGTCAACA 7558259 Score = 96.9 bits (106), Expect = 1e-17 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| |||||| ||||||||||||||| ||||||||| || | |||||| |||| | Sbjct 15622840 GATAGTAGGTAGGGA-AGTGGGAATCTCGTTCATCCATTCAAGCTCATCACTAGTTAGTT 15622782 Query 416 GACGAGGCATTTGGCTACCT 435 ||| |||||||||| ||||| Sbjct 15622781 GACAAGGCATTTGGTTACCT 15622762 >seq18 Length=40650429 Score = 306 bits (338), Expect = 1e-80 Identities = 245/296 (83%), Gaps = 12/296 (4%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||| ||| ||||||| | ||| | ||| ||| | ||| |||||| | Sbjct 24544795 CTTCCACTTAGTCTGCACCTCTTATGTCTCTCCACCAAGCCAGAC-------AAGCTCTA 24544847 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || || |||| |||||||||||| ||||| ||||||||||||||||||||| | || | Sbjct 24544848 GAGCATCGTCTTCCCCCGCTGATTCTGCCAAACCCGTTCCCTTGGCTGTGGTTACACTGG 24544907 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| || ||||| ||||||||||||| || |||||||||||| | |||||||||| ||| Sbjct 24544908 ATAGGAGGTAGGGGCAGTGGGAATCTCCTTCATCCATTCATGCACATCACTAATTAAATG 24544967 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| Sbjct 24544968 ATGAGGCATTTGGCTACCTTAAGAGAGTCCTAGTTACTCCCCCCATTTACCCGTGCTTCA 24545027 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||| ||||| |||||||||||||||||||||||||||||| |||||| Sbjct 24545028 TTGAATTT-----CTTTGGCATTCAGAGCACTGGGCAGAAATCACATTGTGTCAAC 24545078 Score = 78.8 bits (86), Expect = 3e-12 Identities = 84/111 (76%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | ||||||| ||| |||| || | | || ||||||||||| || | Sbjct 24544527 CTTCTGCTCCATGAGAGATTTATGTCCTCCCTGTGCTCTCCAGAGGACACCTGCAGTAGG 24544586 Query 67 GTTTAACAGATGTGCC----GCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| || ||||||| ||||||||||||||| || |||| Sbjct 24544587 GTTTGACAGGTGTACCTACTGCCCCAGTCAAACTCCCCACCTGGCACTGTC 24544637 >seq96 Length=5337999 Score = 163 bits (180), Expect = 9e-38 Identities = 185/242 (76%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 282 TAGAGTCAAGCTCAACAGGG-TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 || ||||| | |||||| | |||| ||| || | | || |||||||| |||||||| Sbjct 1773533 TATAGTCAGGTTCAACAAGAATCTTGTTTGCCTACAGGTTTTGCCAAGCCA-TTCCCTTG 1773591 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||||| ||||| ||| || ||||||| | ||| || || |||||||||||| Sbjct 1773592 GCTGTGGTTTCATCAGATAATAGGTAAGGACAGTAG-AATATCATTCATCCATTCATGCA 1773650 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG--AGTCATAGTTACTCCCG 458 | | |||||||||||||| |||||||||||||| ||||| | ||| ||| ||| Sbjct 1773651 CTTTCTTAATTAGATGACGATGCATTTGGCTACCTCAAGAGTCATGGATACATACACCCA 1773710 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 | |||||| | ||| ||||||||||||| || | |||||||||||| |||| || | Sbjct 1773711 TCATTTACCTGGGCTGTAGTGAATTTCTTCAC-TTCAAATTCAGAGCACTAGGCAAAACT 1773769 Query 519 CA 520 || Sbjct 1773770 CA 1773771 >seq7 Length=60492774 Score = 163 bits (180), Expect = 9e-38 Identities = 192/257 (75%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||| |||||||||||||||||||| || |||| ||| ||| ||| ||| Sbjct 9339524 GACTAGAGTGGAGCTCAACAGGGTCTTCTTTGCCAGCTGT-----CCATGCCTGTTTCCT 9339470 Query 339 TGGCTGTGGTTTCGCTAGATA-GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||||||| || ||| |||| || ||||| ||||||| | | | || ||||| Sbjct 9339469 TGGCTGTGGTTTAACTGAATAAGTAGGTAAGGACACTGGGAATAGTGGTCACCCTTTCAT 9339410 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 | ||||||||||| | || | ||||| | || || ||||| | ||||| ||| Sbjct 9339409 GTATATCACTAATTAGTTTACCAAATATTTGATTGTCTAAAAAGAGTTACAGTTATTCCT 9339350 Query 458 GCCGTTTACCC-GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 ||| |||| | | |||| || |||||||||| |||| ||| | | ||||| ||||| Sbjct 9339349 GCCATTTAACTTGTGCTTCATTAAATTTCTTCATGTTGATATTTAAAACACTGCACAGAA 9339290 Query 517 ATCACATTGCGTCAACA 533 |||||||||| |||||| Sbjct 9339289 ATCACATTGCATCAACA 9339273 >seq24 Length=31855096 Score = 158 bits (174), Expect = 4e-36 Identities = 153/198 (77%), Gaps = 18/198 (9%) Strand=Plus/Plus Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 |||||||||||||||||| ||| ||| || | || | ||||||| |||||||| || | Sbjct 20228720 CCCGTTCCCTTGGCTGTGATTTTGCTGGACTGCAGGTGGGGACAGAAGGAATCTCATTCA 20228779 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||| |||||| | ||||||||||||||| ||| |||||||||||||||| ||||||||| Sbjct 20228780 TCCACTCATGCTCATCACTAATTAGATGATGAGACATTTGGCTACCTTAAAAGAGTCATA 20228839 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 ||||| ||| | |||||||| |||| |||||||||| | |||| Sbjct 20228840 GTTAC--------TTTGC---------ATTGAATTTGTTCAGTTTGACATTC-TAACACT 20228881 Query 509 GGGCAGAAATCACATTGC 526 |||||| ||||| |||| Sbjct 20228882 GGGCAGGAATCATTTTGC 20228899 >seq15 Length=47608596 Score = 123 bits (136), Expect = 8e-26 Identities = 109/134 (81%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 ||||||||| || |||||||||||| | ||||||||| ||| |||| || ||| || Sbjct 20292585 CCATTCATGTGCACCACTAATTAGATCAT-AGGCATTTGATTACTTTAAAAG--TCACAG 20292529 Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 ||||||| || | ||||| || ||| |||||||||||||| |||||||||||||| | Sbjct 20292528 TTACTCCTGCTGGTTACCTGCACTTTACTGAATTTCTTCACTGTGACATTCAGAGCATTA 20292469 Query 510 GGCAGAAATCACAT 523 ||||||||||||| Sbjct 20292468 TGCAGAAATCACAT 20292455 >seq75 Length=8596187 Score = 105 bits (116), Expect = 2e-20 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||||| ||||||| |||||||||| | |||| | |||||||||| |||| ||| | Sbjct 4466144 TTCTGCTCCACAGGAGGTTTCTGTTCTTCCTGAGCTCGCCTTAGGACATCTGCATTACCG 4466203 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || |||||| ||||||||||||||| || |||| Sbjct 4466204 TTTGACAGGTGTACCTCCCCAGTCAAACTCCCCACCTGGCACTGTC 4466249 >seq3 Length=68631033 Score = 80.6 bits (88), Expect = 9e-13 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 || ||| |||||| || || | || | ||||| ||| | ||| | | ||| | Sbjct 51191027 TGATTTTGCTAGACAGGAGGTTGGAGCTGTGGGTTCCTCACTCATC-ACTGATGTATCTT 51190969 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 ||||||||||||| || |||||| ||||| ||||| ||| | ||||||| | | | ||| Sbjct 51190968 ACTAATTAGATGATGATGCATTTAGCTACATTAAGGGAG--ACAGTTACTTCTGGCATTT 51190911 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 | | | || | ||||||||||||| |||| | ||||||||||| ||| Sbjct 51190910 ATCAACTCTACATCAAATTTCTTCACTTGGACACTACAAGCACTGGGCAAAAA 51190858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634962192864