Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11839 733 0.0 seq4959 383 5e-104 seq107 374 3e-101 seq22 206 8e-51 seq33 82.4 2e-13 >seq11839 Length=2239 Score = 733 bits (812), Expect = 0.0 Identities = 471/508 (93%), Gaps = 6/508 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||| || | |||||||||| |||||||||||||||||| Sbjct 2124 GTACTCATTCCAATTACAAGACCCGAATGGGCCCTGTATCGTTATTTATTGTCACTACCT 2065 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2064 CCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 2005 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 2004 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 1945 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1944 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCA 1885 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||||||| ||| ||| ||||| | | ||| | Sbjct 1884 CAAGGCCATGCGATTCGAAAAGTTATTATGAATCATCAAAGAG-TCCGAA-GACATTGAT 1827 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||| | ||||| || |||| | |||| |||||||||||||||| Sbjct 1826 TTTTTATCTAATAAATACATCTCTTCCAAAGGGTCGAGATTTTAAGCATGTATTAGCTCT 1767 Query 359 AGAATTACCACGGTTAT-CCATGTAGT-AAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1766 AGAATTACCACAGTTATACCATGTAGTAAAGGAACTATCAAATAAACGATAACTGATTTA 1707 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATC 476 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1706 ATGAGCCATTCGCAGTTTCACTGTATAAATTGCTTATACTTAGACATGCATGGCTTAATC 1647 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 1646 TTTGAGACAAGCATATGACTACTGGCAG 1619 >seq4959 Length=3422 Score = 383 bits (424), Expect = 5e-104 Identities = 419/555 (75%), Gaps = 55/555 (10%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 3304 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 3245 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3244 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 3185 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 3184 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 3125 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 3124 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 3065 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 || | |||||| | | ||||| || ||||||| || ||| Sbjct 3064 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 3005 Query 286 ----------CCGAAGG----------GCGTTGGTTTTTTATCTAATAAATACAC----C 321 ||| ||| | ||||| |||| |||| |||||| ||| | Sbjct 3004 CCGGCCGGGGCCGGAGGGAAGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 2946 Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 || ||| ||||| | |||||||||||||||||||||||||| |||| Sbjct 2945 CCCCCCGCGAGGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 2886 Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 |||| |||| | || | | | |||| ||| ||||||||||||||||||||||||| Sbjct 2885 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 2826 Query 430 AGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 |||||||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 2825 AGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 2766 Query 490 TATGACTACTGGCAG 504 |||| |||||||||| Sbjct 2765 TATG-CTACTGGCAG 2752 >seq107 Length=3634241 Score = 374 bits (414), Expect = 3e-101 Identities = 423/558 (76%), Gaps = 63/558 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| ||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 773 ACTCCTTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 832 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 833 CCCGGGTCGGGAGTGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 892 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||| | |||||| | |||||||||| Sbjct 893 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCATCACCCGTGGTCACCATGGTAG 952 Query 182 GC-CA-CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || || | | |||||||||||||||||||||||||| ||| |||| | |||||| | Sbjct 953 GCACAGCGA--CTACCATCGAAAGTTGATAGGGCAGACATTCAAATGGGTCGTCGCCGCC 1010 Query 240 TC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGG-----AGCCCC---- 287 | || | |||||| | | ||||| || ||||||| | ||| || Sbjct 1011 ACGGGGGGCGTGCGATCAGCCCGAGGTTATCTAGAGTCACCAAAGCCACCAGCACCCGCC 1070 Query 288 ------------------GAAG-----GGCGTTGGTTTTTTATCTAATAAATACAC---- 320 |||| | ||||| |||| |||| |||||| ||| Sbjct 1071 CCCGGCCGGGGCCAGAGGGAAGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCAT 1129 Query 321 CCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373 ||| ||| | ||||| | |||||||||||||||||||||||||| ||| Sbjct 1130 CCCCCCCG-CGAGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTT 1188 Query 374 ATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 ||||| |||| | || | | | |||| ||| |||||||||||||||||||||||| Sbjct 1189 ATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCG 1248 Query 429 CAGTTTCACTGTATAG--ATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 ||||||||||||| | | ||| |||||||||||||||||||||||||||||||||| Sbjct 1249 CAGTTTCACTGTACCGGCAGTGC--GTACTTAGACATGCATGGCTTAATCTTTGAGACAA 1306 Query 487 GCATATGACTACTGGCAG 504 ||||||| |||||||||| Sbjct 1307 GCATATG-CTACTGGCAG 1323 >seq22 Length=34775686 Score = 206 bits (228), Expect = 8e-51 Identities = 183/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| ||||||| ||||| |||||||||||||||| || |||| ||||||||||| Sbjct 34670500 AAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTCCCCAGGTTGGGAGTGGGTAATTTG 34670559 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 | ||||||| ||||| |||| ||||||||||| |||||||||||||||||| | ||| || Sbjct 34670560 CACGCCTGCCGCCTTACTTGCATGTGGTAGCCATTTCTCAGGCTCCCTCTCTGAAATTGA 34670619 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 ||||| |||| ||| ||| || | |||||||||||| ||||||||||||||| Sbjct 34670620 ACCCTGATTCTTCGTCACCTGTGGTCACCATGGTAGGCATGGCGACTACCATCGAAAGTT 34670679 Query 206 GATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT 254 ||||||||||| ||| |||| |||| || | | || |||| ||| Sbjct 34670680 GATAGGGCAGACATTCAAATGGGTCATCACCACCACGGGGGCATGTGAT 34670728 >seq33 Length=24047555 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 6611029 TACTTAGACATGCAAGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 6611079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510180342528