Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq161 143 2e-29 seq4 116 3e-21 seq67 113 4e-20 seq82 109 4e-19 seq19 104 2e-17 >seq161 Length=830332 Score = 143 bits (158), Expect = 2e-29 Identities = 587/914 (64%), Gaps = 41/914 (4%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| ||| || | |||| || | || || | | || || || || || | | Sbjct 530708 ATGAACCACTACTGAGAAAGAACCCCTGCCGCTTGGCCATCTTTCCTATGGAATACCATG 530649 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 ||| |||| |||| || || || || |||||||| ||||| | |||||||| | | Sbjct 530648 GTATCTGGCAGATGTGTAATAAAGCTGAGGCTTCCTTTTGGACAGCCGAGGAGGTGGCTC 530589 Query 61145 TGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGC--GGTGAACAACATTTCATTA 61201 | |||| ||||| | ||||||| || | | ||| | ||| | |||| || Sbjct 530588 T-TCCAGGGACATTCAGCACTGGGAAGCCCTGA---AGCCTGAGGAATGATATTTTATAT 530533 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| |||| ||| || || || || || ||||||||||| |||| | Sbjct 530532 CCCACTTTCTGGCTTTCTCTGCGGCAAGTGATGGCATAGTAAATGAGAATTTGGTGGAGC 530473 Query 61262 G-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || || || || ||| | | || || || ||||||| |||||||| |||||| Sbjct 530472 GATTTAGC-CAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCTATGGCTTCCAAATTGCC 530414 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| || | || || || ||||| ||| | || || || || ||||| | || Sbjct 530413 ATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGACTCC 530354 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 ||| | ||| | ||||||||||| | || || || |||||| |||||| Sbjct 530353 AAAGAAAGGGAATTTCTCTTCAATGCCATTGTAACAATGCCTTGTGTGAAGAAGAAAGCC 530294 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGG 61498 ||||||||||| || ||| | |||| |||||| | ||| ||||| | | | Sbjct 530293 GATTGGGCCTTGCGTTTGAT--TGGGGACAAAGAGGCTACCTATGGAGAACGTGTTGTAG 530236 Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558 | ||||| | || ||||| | | ||| ||| ||| | | | Sbjct 530235 CCTTTGCTGCTGTGGAGGG---AATCTTC---------TTT-------TCT----GCTCA 530199 Query 61559 AGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAG 61617 ||||||| ||||| ||||| || || || || ||||| | || || || || ||| Sbjct 530198 AGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCA-AAGATGAG 530140 Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677 ||| | || ||||| ||||| || | ||||||| | ||| || | || || Sbjct 530139 GGCTTACACTGTGACTTTGCCTGCCTGATGTTCAAAC---ACCTGCTGCACAAACCATCA 530083 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 ||| || | || || | || | || || || || ||||||| || || || Sbjct 530082 GAGCAGAGAGTAAAAGAAACAATTATCAATGCTGTCACAATAGAACAGGCGTTCCTCACA 530023 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 || || ||||| | || || || |||||||| | ||| |||||| ||||| Sbjct 530022 GAAGCCTTGCCTGAGAAGCTAATTGGGATGAATTGCACTTTGATGAAGCAGTACATTGAC 529963 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 ||||| || || | || || | || |||| | || | | | || |||| Sbjct 529962 TTTGTGGCAGATAGGCTTATGCTGGAGCTGGGCTTTAACAAGGTTTTCAAAGTAGAAAAT 529903 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 |||||||| || ||||| | ||||| || || || ||||| || || || ||||| | Sbjct 529902 CCATTTGACTTTATGGAGAATATTTCACTAGAAGGGAAGACTAACTTCTTTGAGAAGAGA 529843 Query 61918 GTAGGCGACTATCA 61931 |||||| | ||||| Sbjct 529842 GTAGGCAAGTATCA 529829 >seq4 Length=67649338 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| ||||| |||| ||||| || Sbjct 16408273 GGTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTG 16408214 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 16408213 GTTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 16408154 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 16408153 AGACTCAATGATGGCATACCAAAG 16408130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||| ||||| | ||||| |||||||| | Sbjct 16406657 CATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCGCTGCTCCTCCTT 16406598 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || || || ||||||||||||||||| |||||| |||||||||| Sbjct 16406597 TCCTGTG-TTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGTTCCAGGT 16406539 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 16406538 AAATAGCAAA 16406529 >seq67 Length=10555288 Score = 113 bits (124), Expect = 4e-20 Identities = 438/676 (65%), Gaps = 12/676 (2%) Strand=Plus/Plus Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||| ||||| |||| | || |||||||||||||| || ||||| | |||||| Sbjct 3668202 AATGAAAATTTGGTGGAGAGCTTTAGTCAGGAGGTGCAAGTTTCAGAGGCTTGCTGTTTC 3668261 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || || || || ||| ||| ||||||| ||||| |||| |||||| | || || ||| Sbjct 3668262 TATGGTTTTCAAATTCTCATAAAGAATGTTCACTCAAAGATATACAGTTTGCTAATAGAT 3668321 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 || ||||| || | | || | || || || ||||| || | || || || Sbjct 3668322 ACTAGAATCAGAGATCCCAAGAAAGGGAAATTTTTATTTAATGCAATTAAAACAATGCCA 3668381 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAG-TACAACGGCTACATT 61481 || ||| ||| | || |||||| | ||||| | ||| || || | |||| || Sbjct 3668382 TACGTTAAGAAAAAAACAGACTGGGCCCTGTGATGGAT-AGCAGATAGAAAGTCTACTTT 3668440 Query 61482 TGGTGAACGATTGCTGG-CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 ||| ||| || || ||| ||| | | | || || || | || ||| ||||| |||| Sbjct 3668441 TGGGGAAAGAGTGGTGGCCATCAGTGCT-GTGGAAGGAATTTTCTTCTCAGGATCTTTTG 3668499 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 | || || || ||||| ||||| | || | || || || || || || ||||||| Sbjct 3668500 CTGCTATTTTCTGGTTAAAGAAGAGAGGTCCCATCCCTGGACTCACATTTTTCAATGAGC 3668559 Query 61601 TGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTAT 61659 |||| | || | || || | | | | ||| ||||| || ||| | | || Sbjct 3668560 TGATCAACA-GAGATGAAGAACTTCTCTATGACTTTGC---TTGCCTAATGTTTCAGTAC 3668615 Query 61660 CTGGTGAATCGTCCGTC-GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTAT 61718 | || ||| | || | || | | ||| | ||||| || | | || || | || Sbjct 3668616 TTAGTAAATAAGACTTCAGAAGAAAAGGGTGAGGGAGATCATTGTTAATGCTGTCAAAAT 3668675 Query 61719 CGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACT 61778 || ||||| ||| | || || | ||||| || ||||| | ||||| |||| | Sbjct 3668676 TGAGCAGGAGTTTTTAACAGAAGACTTGCCAGTTGGCCTCATTAGGATGAACTGTGTTTT 3668735 Query 61779 AATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGC 61837 ||| ||||||||||||||||| || || | | | || | | |||| | | Sbjct 3668736 GATGAGCCAGTATATTGAATTTGTAGCTGAAAGATTACTTGTGGAACTTGGATTCTCAAA 3668795 Query 61838 GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGA 61897 || | | | | | |||| || |||||||| ||||| | ||||| | ||||| || | Sbjct 3668796 GG-TTTTTCAGGCAGAAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGATGGGAAAA 3668854 Query 61898 CGAATTTTTTCGAGAA 61913 | ||||| || ||||| Sbjct 3668855 CAAATTTCTTTGAGAA 3668870 >seq82 Length=7573503 Score = 109 bits (120), Expect = 4e-19 Identities = 292/439 (67%), Gaps = 8/439 (2%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| ||| ||| |||||| | || | || | |||| | ||| | || | | Sbjct 1079028 ATGAACCACTACTGCGAGAGAACTC-CGCCACTTTGCCATGTTTGCTATCAATTACCACG 1078970 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 ||||||||| ||||| || || || || |||||||||||||| | ||||||||| ||| Sbjct 1078969 ATATTTGGCAAATGTATAAGAAAGCCGAGGCTTCCTTCTGGACAGCGGAGGAGGTGGATC 1078910 Query 61145 TGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 | ||||| |||| | |||||||| | | | | | | ||| | |||| || Sbjct 1078909 TTTCCAAGGACAGTCAGCACTGGGAGGCCCTGAAGCCTGAG--GAATGATATTTTATATC 1078852 Query 61203 ACATGTGTTGGCGTTCTTTG-CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 |||||| | || ||||||| ||| | || || || | | ||| ||| | || | | Sbjct 1078851 ACATGTTCTAGCTTTCTTTGAACGCATGTGATGGCATAGCAAGTGAAAATCTGGTGCAGC 1078792 Query 61262 G-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || || ||||| ||| | || || | ||||||| |||||||| |||||| Sbjct 1078791 GATTTAGC-CAAGAGGTTCAAATTATAGAAGCCGGCTGTTTCTGTGGCTTCCAAATTGCC 1078733 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| || | || || || || || || | || || || | ||||| | | Sbjct 1078732 ATGGAAAACATACATTCTGAAATATATGGTCTCCTTATTGACATTTACATTAAAAATTCC 1078673 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 || | ||| | | ||||||||| || | ||| | ||||||| |||||| Sbjct 1078672 TAAGACAGGGAATTTCTCTCCAATGCCATTGAAATGATGTCTTGGGTGAAGAAGAAAGCA 1078613 Query 61441 GATTGGGCCTTCAATTGGA 61459 ||||| ||||| ||||| Sbjct 1078612 GATTGTGCCTTGTGTTGGA 1078594 >seq19 Length=38427206 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| || || |||||| ||| |||||| Sbjct 3921328 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGTTTTCAGATTCTCATCGAGAAT 3921269 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || ||||| |||||||| || Sbjct 3921268 GTTCACTCAGAGATGTACAGTTTGCTAATAGATACTTACATCAGAGA 3921222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397497533929520