Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8716 343 3e-92 SEQ28681 322 8e-86 SEQ30530 320 3e-85 SEQ30322 318 1e-84 SEQ21649 288 2e-75 SEQ13013 215 9e-54 SEQ61937 212 1e-52 SEQ41923 205 2e-50 SEQ60111 154 3e-35 SEQ54004 154 3e-35 seq3208 113 8e-23 >seq8716 Length=44541 Score = 343 bits (380), Expect = 3e-92 Identities = 254/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||| ||||||||||||||||||||| Sbjct 7502 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGAAGGGTAAAACTAACCTGTCTC 7443 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 7442 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 7383 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 7382 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGATGTCGCTA 7323 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 7322 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 7263 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | || | |||||||| ||||| | |||||| ||| |||||||| Sbjct 7262 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 7208 >SEQ28681 Length=3299 Score = 322 bits (356), Expect = 8e-86 Identities = 248/293 (85%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||||||||||||||||||||||| ||| Sbjct 2236 TACTGAGCAGGATTACCATGGCAACAACATATCATCAGTAGGGTAAAACTAACCTATCTG 2295 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2296 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2355 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||| |||||||||| |||| ||||| ||||||||| | ||||||| Sbjct 2356 AATTCTGCTTCACAATGAAAGGAAGAGCCTACATTGAAGGGTCAAAAAGCGATGTCGCTA 2415 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| || Sbjct 2416 TGAACGCTTGGCTGCCACAAGTCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 2475 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | | || | |||||| | ||||| |||||||| ||| |||||| Sbjct 2476 TAAAACTCAAAAGGTCAGAAGGATTGTGAGGCCCCACTTTCACGGTCTGTATT 2528 >SEQ30530 Length=2995 Score = 320 bits (354), Expect = 3e-85 Identities = 248/294 (84%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 2455 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 2396 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || ||||||||||||||||||||||| |||||||||||||||||||||| |||| | Sbjct 2395 ACGATGGTCTAAACCCAGCTCACGTTCCTTATTAGTGGGTGAACAATCCAATGCTTGGTG 2336 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||| |||||||||||||| || || ||| Sbjct 2335 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAAAAAGCGACATCACTA 2276 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||| |||||||||||||||| |||||||||||||||||||||||||| |||||| || Sbjct 2275 TGAATGCTTGGCTGCCACAAGTCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 2216 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||||||| ||||||| Sbjct 2215 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATTC 2162 >SEQ30322 Length=3029 Score = 318 bits (352), Expect = 1e-84 Identities = 229/264 (87%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 498 TCATCAGTAGGGTAAAACTAACCTGTCTCATGATGGTCTAAACCCAGCTCATGTTCCCTA 439 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||||| || |||||||||||| ||||||||||||||| | Sbjct 438 TTAGTGGGTGAACAATCCAACGTTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCAA 379 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||| Sbjct 378 CATCGAAGGATCAAAAAGCGACGTCACTATGAATGCTTGGCCGCCACAAGCCAGTTATCC 319 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | || | ||||||| ||| Sbjct 318 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCTTGAGG 259 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || | |||||| ||| |||||||| Sbjct 258 CCCCGCTTTCACGGTCTGTATTCA 235 >SEQ21649 Length=5368 Score = 288 bits (318), Expect = 2e-75 Identities = 242/294 (82%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 1083 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 1142 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1143 ATGAAGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTT 1202 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||| ||||||||||||||||||||||||||||| ||| ||| Sbjct 1203 AATTCTGCTTCACAGTGAT----AGAGCCGACATCGAAGGATCAAAAAGCAATGTCACTA 1258 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||||||| || |||||| |||||| || Sbjct 1259 TGAACGCTTGGCCACCACAAGCCAGTTATCCCTGTGGTTAC-TTTCTGACACCTCCTGCT 1317 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| |||||| ||| ||||||| Sbjct 1318 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCTGCTTTCACGGTCTGTATTC 1371 >SEQ13013 Length=17668 Score = 215 bits (238), Expect = 9e-54 Identities = 241/331 (73%), Gaps = 47/331 (14%) Strand=Plus/Plus Query 6 AGCGGAATTACCATTGGGGCGACGG----TCATCAGTAGGGTAAAACTAACCTGTCTCAT 61 ||| | |||||||| ||| |||| |||||||||||||||||||||| ||||||| Sbjct 16994 AGCAGGATTACCAT---GGCAACGGCACATCATCAGTAGGGTAAAACTAACGTGTCTCAC 17050 Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| Sbjct 17051 -ACGGTCTAAACCCAGCTCACGCTCCCTATTAGTGGGTGAACAAACCAACGCTCGGTGAA 17109 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||| || | |||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 17110 TTCCTCTCCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTCTG 17169 Query 182 AACGCTTG---------------------------------------GCTGCCACAAGCC 202 |||||||| ||||||||||||| Sbjct 17170 AACGCTTGAACGCTCTGAACGCTCTGAACGCTCTGAACGCTCTGAACGCTGCCACAAGCC 17229 Query 203 AGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGA 262 |||||||||||||| |||||||||| |||||| || | ||| | || | ||||| Sbjct 17230 AGTTATCCCTGTGGGAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGA 17289 Query 263 TCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||||| |||||| ||| ||| ||| Sbjct 17290 CCGTGAGGCCCGGCTTTCACGGTCTGTGTTC 17320 >SEQ61937 Length=1240 Score = 212 bits (234), Expect = 1e-52 Identities = 221/294 (75%), Gaps = 22/294 (7%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || | |||||||||||||||||||||||||||| Sbjct 545 TACTGAGCAGTATTACCATGGCAACAACATTTCATCAGTAGGGTAAAACTAACCTGTCTC 486 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| || |||||||||||||| |||||||| ||| | Sbjct 485 ATGATGGAATAAACCCAGCTCAC---------------------AATCCAACACTTGGTG 447 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| || || || Sbjct 446 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACATCACTC 387 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||| |||||| ||||||||||||| || | ||| |||| ||||||| |||||| || Sbjct 386 TGAACACTTGGCCGCCACAAGCCAGTAATACATGTAGTAATTTTTCTGACACCTCCTGCT 327 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||| | ||||| | |||||||||| ||||||| Sbjct 326 TAAAACCCAAAAGGTCAGAAGGATTGCGAGGCCCCGCTTTCATGGTCTGTATTC 273 >SEQ41923 Length=1946 Score = 205 bits (226), Expect = 2e-50 Identities = 159/187 (85%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 6 AGCGGAATTACCATTGGGGCGACGG----TCATCAGTAGGGTAAAACTAACCTGTCTCAT 61 ||| | |||||||| ||| |||| || ||||||||||||||||||| ||||| | Sbjct 350 AGCAGGATTACCAT---GGCAACGGCACATCGTCAGTAGGGTAAAACTAACGTGTCTTAC 294 Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 293 -ACGGTCTAAACCCAGCTCACGCTCCCTATTAGTGGGTGAACAATCCAACGCTCGGTGAA 235 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||| ||| | |||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 234 TTCCGCTCCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTCGG 175 Query 182 AACGCTT 188 ||||||| Sbjct 174 AACGCTT 168 >SEQ60111 Length=1281 Score = 154 bits (170), Expect = 3e-35 Identities = 113/130 (87%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 130 TACTGAGCAGTATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 71 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| | Sbjct 70 ATGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTAGGTGAACAATCCAACACTTGGTG 11 Query 120 AATTCTGCTT 129 |||||||||| Sbjct 10 AATTCTGCTT 1 >SEQ54004 Length=1448 Score = 154 bits (170), Expect = 3e-35 Identities = 113/130 (87%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 1319 TACTGAGCAGTATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 1378 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| | Sbjct 1379 ATGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTAGGTGAACAATCCAACACTTGGTG 1438 Query 120 AATTCTGCTT 129 |||||||||| Sbjct 1439 AATTCTGCTT 1448 >seq3208 Length=185748 Score = 113 bits (124), Expect = 8e-23 Identities = 117/153 (76%), Gaps = 13/153 (8%) Strand=Plus/Minus Query 76 AGCTCACGT-TCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134 |||||| | ||||||||||| ||||||||| |||| |||| | |||||| | Sbjct 124747 AGCTCATCTCTCCCTATTAGTAGGTGAACAAGCCAATGCTTGGC------TGCTTCACAA 124694 Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 ||||||||||||| || ||||||| |||| | | || |||||| |||||| | Sbjct 124693 TGATAGGAAGAGCTGA------AGGATCAGAAAGTGGCATTGCCATGAACTCTTGGCCAC 124640 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||||||||||||| ||||| |||||||||| Sbjct 124639 CACAAGCCAGTTATCCTTGTGGCAACTTTTCTG 124607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853812232608