Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7357 349 1e-93 seq1313 338 2e-90 SEQ60404 322 2e-85 seq1421 226 9e-57 seq1091 129 2e-27 SEQ10969 100 9e-19 seq2219 75.2 4e-11 seq288 75.2 4e-11 >seq7357 Length=60351 Score = 349 bits (386), Expect = 1e-93 Identities = 250/297 (84%), Gaps = 32/297 (11%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 39531 CTCCCACTTATTCTACACCTCTCTTGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 39590 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||| Sbjct 39591 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAG---------------------------- 39622 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 39623 ----TAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 39678 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39679 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 39738 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 39739 TTGAATTTCTTCACTTTGACCTTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 39795 >seq1313 Length=432281 Score = 338 bits (374), Expect = 2e-90 Identities = 253/297 (85%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||| ||||||||||||| ||| ||||| | |||||| |||| | || Sbjct 399433 CTCCCACTTGCTCTACACCTCTCATGTCTCTTCACTGTGCTAGACTAGCAACAAGTTTAA 399374 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| | | Sbjct 399373 CAGGGTCTTCTTTCCCCGCTTATTCTGCCACGCCCGTTCCCTTGGCTGTGGTTTCGATGG 399314 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| |||| ||||| || ||||| |||||| ||||||||||| | Sbjct 399313 ATAGTAGGTAGGGACAATGGGGATCTCATTCATCCACTCATGCCTGTCACTAATTAAACC 399254 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | || |||||||||||||||| ||||||||||||||||||| || | ||||| ||||| Sbjct 399253 ATGAAGCATTTGGCTACCTTAGGAGAGTCATAGTTACTCCCACCATCTACCCCCGCTTCA 399194 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 399193 TTGAATATCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACGTTGCATCAACA 399137 >SEQ60404 Length=1274 Score = 322 bits (356), Expect = 2e-85 Identities = 250/293 (85%), Gaps = 10/293 (3%) Strand=Plus/Plus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||||||| ||| ||||| | | |||||||||||||||| Sbjct 83 GGCTCCCACTTCTTCTACACCTCTCAGGTCCCTTCACCGCGCCAGACTAGAGTCAAGCTC 142 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 | ||||||||| |||||| ||||| |||||||||||||||||||||||| |||||| Sbjct 143 AGCAGGGTCTT---TCCCCG---ATTCCACCAAGCCCGTTCCCTTGGCTGTGGGTTCGCT 196 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 || ||||| | |||||||||||||||||||| || || ||| ||||| ||||||| ||| Sbjct 197 GGAGAGTAGGTGGGGACAGTGGGAATCTCGTTCAT-CACTCACGCGCGCCACTAATCAGA 255 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||| ||||||| |||| ||||||||| || |||||||| Sbjct 256 TGACGAGGCATTTGGCTACCTTA--AGAGTCACAGTTCCTCCCGCCGGGTA-CCGCGCTT 312 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 |||||| | |||||||||| |||||||||||||||||||||||| | ||| Sbjct 313 CACTGAATTCCCTCACTTTGACCTTCAGAGCACTGGGCAGAAATCACGTCGCG 365 >seq1421 Length=402085 Score = 226 bits (250), Expect = 9e-57 Identities = 166/192 (86%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATT-CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| |||||||||||| ||| | ||| | | | ||||| ||||||||| | Sbjct 105929 CTCCCACTTATTTCTACACCTCTCATGTCTCTCCACCATGACAGACTAAAGTCAAGCTTA 105988 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||| || Sbjct 105989 ACAGCATCTTCTTTCCCTGTGGATTCCGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTG 106048 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||| || |||||||||||||||| || ||||||||||| | |||||||||||||| Sbjct 106049 GACAGTAGGTAAGGACAGTGGGAATCTCATTCATCCATTCATGTGAGTCACTAATTAGAT 106108 Query 416 GACGAGGCATTT 427 |||||||||||| Sbjct 106109 GACGAGGCATTT 106120 >seq1091 Length=507975 Score = 129 bits (142), Expect = 2e-27 Identities = 86/96 (90%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 429154 AGAGAGTCATAGTTACTCCTTCCGTTTACCTGAGCTTCATTGAATTTCTTCACTTTGACA 429213 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||||||| ||||||| |||||| Sbjct 429214 TTCAGAGCATTGGGCAGAAAATACATTGCTTCAACA 429249 >SEQ10969 Length=28375 Score = 100 bits (110), Expect = 9e-19 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||| ||| Sbjct 4125 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCCTTACC 4066 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATG 111 ||| |||| ||| || |||||| ||||||||||||||| || || Sbjct 4065 ATTTGACAGGTGTTCCACCCCAGTCAAACTCCCCACCTGGCACTG 4021 >seq2219 Length=269907 Score = 75.2 bits (82), Expect = 4e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 147716 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCACCTCAACA 147668 >seq288 Length=1121710 Score = 75.2 bits (82), Expect = 4e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||| || |||||||||||||||||||| Sbjct 164856 TTCACTTTGACATTCAGAGCACCGGACAGAAATCACATTGCGTCAA 164811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634075096864