Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value SEQ60111 86.0 1e-14 SEQ54004 82.4 1e-13 SEQ28681 82.4 1e-13 SEQ21649 82.4 1e-13 SEQ61937 75.2 2e-11 >SEQ60111 Length=1281 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| |||| | || | |||||| | ||||| | || | || || | || || | Sbjct 128 GTACGATAGGATCGGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTAAGGAGCCAAT 185 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 186 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 239 >SEQ54004 Length=1448 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| |||| | || | |||||| | ||||| | || | || || | || || | Sbjct 1321 GTACGATAGGATCGGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTAAGGAGCCAAT 1264 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||| |||| |||||||| |||||||||||||||||||||||| Sbjct 1263 GGGGCGAAGCTACCTTCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1210 >SEQ28681 Length=3299 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| | |||||| || | |||||| | ||||| | || || |||| || || | Sbjct 2238 GTACAATAGGAACTGCAGG-TTCAGAC-ATTTGGTGTGTGTACTTGGCTGAGGAGCCAAT 2181 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||| ||||| Sbjct 2180 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAAAATCC 2127 >SEQ21649 Length=5368 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| ||||||| | | |||||| | ||||| | || | || ||| || || | Sbjct 1085 GTACGATAGGAACCTCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGCGGAGCCAAT 1028 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||| ||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 1027 GGGGCGAAGATACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 974 >SEQ61937 Length=1240 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 606 GAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818654058752