Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3800 248 3e-63 seq6014 232 2e-58 seq1955 114 4e-23 seq7245 93.3 1e-16 seq654 84.2 7e-14 seq896 78.8 3e-12 >seq3800 Length=152675 Score = 248 bits (274), Expect = 3e-63 Identities = 394/552 (71%), Gaps = 61/552 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||||||| || | || | | | || ||||||| ||||| | |||||||||| Sbjct 82359 ACTCATTCCAATTGCAGGGCCTCCAGAAAGTCCTGTATTGTTATTTTTCATCACTACCTC 82418 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||| | | ||||||| |||||||||||||||||| ||| Sbjct 82419 CCCGGGTCGGGAGGGGGTAATTTGCTCACTTGCTGCCCTCCTTGGATGTGGTAGCCATTT 82478 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||| || |||||| ||||| ||||||| ||||| || ||| || | |||||||||| Sbjct 82479 CTCATACTTCCTCTCTGGAATTGAACCCTGATTCCTGGTCACCTGTGGTCACCATGGTAG 82538 Query 182 GC-CA-CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || || | | ||||||| |||| ||||||||||||| ||| ||||| || || Sbjct 82539 GCACAGCGA--CTACCATTGAAAATTGATAGGGCAGATATTAGAATGGGTTGTCACCACG 82596 Query 240 TCAAGGCCATG----CGATTCGTTAAGTTATTATGAATCACCAAGG--AGCCCC------ 287 || | || ||| ||| | ||||| || ||||||| | | |||| Sbjct 82597 ACAGAGGTGTGTGACCGACTCG--AGGTTATCTAGAGTCACCAATGCTACCCCCACCCCC 82654 Query 288 -------GAAGGGCGTT-----GGTT---TTTTATCTAATAAATACA------CCCCTTC 326 | |||| | |||| ||| |||| |||||| || ||| | Sbjct 82655 AGAGCCGGGAGGGAACTGACCAGGTTAGGTTTGATCTGATAAATGCACGCAACCCCACTA 82714 Query 327 CGAAGTCGGGGTT-------TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 |||| |||||| || ||||||||||||||||||||| ||| |||||||| Sbjct 82715 GGAAG--GGGGTTAGCACCCATTGACATGTATTAGCTCTAGAATTAACACAGTTATCCAA 82772 Query 380 GTAGTA----AGGTA-CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 |||| | ||| | | |||| ||| |||||| ||||| ||| ||||| ||||||| Sbjct 82773 GTAGGAGAGGAGGGAGAGACCAAAGGAACCATAACTTATTTAGTGAACCATTTGCAGTTT 82832 Query 435 CACTGTA-TAGAT-TGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 | ||||| || | ||| |||||||||||||||| |||| |||||||||||||||| Sbjct 82833 CCCTGTACCAGCTGTGC--GGACTTAGACATGCATGGTTTAA--TTTGAGACAAGCATAT 82888 Query 493 GACTACTGGCAG 504 | |||||||||| Sbjct 82889 G-CTACTGGCAG 82899 >seq6014 Length=82691 Score = 232 bits (256), Expect = 2e-58 Identities = 196/236 (83%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||| Sbjct 3599 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCATCACTACCTC 3658 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | || |||| ||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 3659 CCAG-GTGGGGAGTGGGTAATTTGATCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTT 3717 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||| | ||||| ||||||| ||||||| | |||| | | |||||||||| Sbjct 3718 CTCAGGCTCCCTCCCTGGAATTGAACCCTGATTCCCCTTCACCCATGGTCACCATGGTAG 3777 Query 182 GCCACTAT-CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 | || | |||||||||||||||||||||||||| ||| |||| ||||||| Sbjct 3778 G-AACGGTGACTACCATCGAAAGTTGATAGGGCAGACATTCAAATGGGTCATCGCC 3832 >seq1955 Length=304754 Score = 114 bits (126), Expect = 4e-23 Identities = 104/130 (80%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||| |||||||||| | | || |||||| ||||||| | ||||| | |||||||||| Sbjct 261716 ACTTATTCCAATTATAGGGCCTTGAAAGAGTCCTGTATTATTATTTTTCATCACTACCTC 261775 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| || |||| | |||||||||| ||| |||||||||| | |||||||||||| ||| Sbjct 261776 CCCAGGTTGGGAGTCGGTAATTTGCATGCCAGCTGCCTTCCATAGATGTGGTAGCCATTT 261835 Query 122 CTCAGGCTCC 131 |||| |||| Sbjct 261836 CTCAAACTCC 261845 >seq7245 Length=62086 Score = 93.3 bits (102), Expect = 1e-16 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 ||| |||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 38734 ATTTGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGA 38793 Query 484 CAAGCATATGACTACTGGCAG 504 |||||||||| |||||||||| Sbjct 38794 CAAGCATATG-CTACTGGCAG 38813 >seq654 Length=721170 Score = 84.2 bits (92), Expect = 7e-14 Identities = 81/104 (78%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-----ATCAA 397 || ||| ||||||||||||| || ||| ||||| || |||| || | | | | ||| Sbjct 345201 AGGATGCATTAGCTCTAGAAATATCACAGTTATTCAAGTAGGAAAGGAGTGAGTGACCAA 345142 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 | ||| ||| |||||||||||||||||| ||| |||||||||| Sbjct 345141 AGGAACCATACCTGATTTAATGAGCCATTTGCACTTTCACTGTA 345098 >seq896 Length=591016 Score = 78.8 bits (86), Expect = 3e-12 Identities = 86/113 (76%), Gaps = 6/113 (5%) Strand=Plus/Plus Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||| ||||||||||||| || ||| |||||| ||||||||| || || |||| ||| Sbjct 255024 TTCCCAGGCTCCCTCTCTGGCATCAAACCCTGATTCCCCGTCCCCTGTGCTCACCACGGT 255083 Query 180 A-----GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 | ||| |||| |||||||| || || |||||||||||| || ||||| Sbjct 255084 AGGCACGGCAACTA-CCTACCATAGAGAGCTGATAGGGCAGATGTTCAAATGA 255135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509360950528