Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6788 111 1e-19 seq847 105 5e-18 seq41 87.8 1e-12 >seq6788 Length=68851 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || || |||||||| || ||||| ||||| |||| ||||| || Sbjct 50174 GGTGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTG 50233 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| ||||| ||||| || Sbjct 50234 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTCTGTCTG 50293 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 50294 AGACTCAATGATGGCATACCAAAG 50317 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||| || ||||| || || || | Sbjct 52131 CATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGTTCTTCCTT 52190 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 52191 CCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 52249 Query 66459 AGATGGCGAA 66468 | ||||| || Sbjct 52250 AAATGGCAAA 52259 >seq847 Length=614715 Score = 105 bits (116), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| ||||||||||| || | ||||| || |||||||| ||||| || | Sbjct 72716 TGGAGCGTTTTAGCCAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 72657 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || ||||| |||||||| | Sbjct 72656 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTGATAGATACTTACATCAGAG 72597 Query 61376 A 61376 | Sbjct 72596 A 72596 >seq41 Length=2266706 Score = 87.8 bits (96), Expect = 1e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || ||||| | ||||| ||||||||||| ||||| || Sbjct 1098716 TGGAGCGATTTAGC-CAAGAAGTTCAAGTCACAGAGGCCCGTTGTTTCTATGGCTTTCAA 1098774 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGG 61374 ||||||||||| || | ||||| || ||||||||| | || || || || ||||| | | Sbjct 1098775 ATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAG 1098834 Query 61375 GA 61376 || Sbjct 1098835 GA 1098836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397234673149520