Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq7 118 2e-24 seq14 102 1e-19 seq1 93.3 6e-17 seq58 84.2 3e-14 >seq7 Length=28733031 Score = 118 bits (130), Expect = 2e-24 Identities = 171/235 (73%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||| || ||||||| ||||| || || || |||||| |||| ||| Sbjct 10077407 GTACAAAGGGCAAGGACTTAATCAACGCAAGCTT-ATAACCTGCACTTACTGGGAA-TTC 10077350 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 || || | | || ||||||||| | |||||||| | | |||| || | || || Sbjct 10077349 TTCATTCATGGGGAATAATTGCAATCCGCAATCCCCATTATGAATGAGGTTCAACAGGTT 10077290 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| | || ||| | || | ||| ||||| |||| ||| ||| Sbjct 10077289 ACCCTCACCTGCCAGCATAGGGTAGGCACATGCTGAGCCAGTCAGTATAGCACGCATGCA 10077230 Query 180 GCCCAGAACATCTA-AGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| ||||||| |||| |||||||||||||||||| |||||||| ||||| Sbjct 10077229 GCCCCAGACATCTACAGGGAATCACAGACCTGTTATTG-CTCAAACTGGGGTGGC 10077176 >seq14 Length=24332566 Score = 102 bits (112), Expect = 1e-19 Identities = 146/198 (74%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 39 ACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCAT 98 |||||| |||||| |||||||| | ||| | | || ||||||| | | |||||||| Sbjct 22161577 ACTCGCACTTACTGGGAATTTC-TAGTTCATGGGGAATAATTGCAGTCCCCGATCCCCAT 22161635 Query 99 CACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGA 155 || || |||| | ||||||| |||| | ||| ||| ||| | | | ||| Sbjct 22161636 CATGAATGGGGCTCAATGGGTTACCCGTGCCTGCCT-CCATAGTG-TAGGCACATGCTGA 22161693 Query 156 ATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 |||||||||||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 22161694 GCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 22161753 Query 216 GCCTCAAACTTCCGTGGC 233 | ||||| || ||||| Sbjct 22161754 G-CTCAATCTATGGTGGC 22161770 >seq1 Length=79790405 Score = 93.3 bits (102), Expect = 6e-17 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 45 GCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 ||||||| |||||| | ||||| | | || ||||||||| |||||||||||| Sbjct 54791677 GCTTACTGGGAATT-CTTCGTTCATGGAGAATAATTGCAATCCCTGTTCCCCATCACGAA 54791735 Query 105 GAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCA 163 | |||| | |||||| |||| |||| ||| | || | ||| ||| Sbjct 54791736 TGGAGTTCAGCGGGTTACCCATGCCTGCCGGCATAGGGTAGGCACATGCTGAGCCAGTCA 54791795 Query 164 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 ||||||||||||||| |||| | ||||||||||||||||||| |||||||||| Sbjct 54791796 GTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGGCCTGTTATTG 54791848 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/73 (84%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||| | ||||| ||| | |||||||||||| ||||||||||||||||| ||| Sbjct 32410732 TCAGTGTAGCACTCGTGCATCCCTGGACATCTAAGGGCTTCACAGACCTGTTATTG-CTC 32410674 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 32410673 AATCTCGGGTGGC 32410661 >seq58 Length=12142327 Score = 84.2 bits (92), Expect = 3e-14 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||||||||| |||| | || | |||||||||||||||||||||||||||||| ||| Sbjct 2380193 TCAGTGTAGCGCGTGTGCAGTCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 2380251 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 2380252 AATCTCGGGTGGC 2380264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751843489060