Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq68 91.5 3e-16 >seq68 Length=11249547 Score = 91.5 bits (100), Expect = 3e-16 Identities = 156/220 (71%), Gaps = 20/220 (9%) Strand=Plus/Plus Query 38 CATGCCCTTCACTGGGTGTGCC--GGGGAGCCAGGACTTTTACTTTGAAAAAATT-AGAG 94 ||||| ||| |||||||| || |||| ||| | ||||||||||||||||| | || Sbjct 7922681 CATGCTCTTAGCTGGGTGTCCCATGGGGTCCCAAGGTATTTACTTTGAAAAAATTAACAG 7922740 Query 95 TGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGACGTG 151 || |||||||| || | | | | |||| |||| |||| ||| ||||||||| | Sbjct 7922741 TGCTCAAAGCAAGCTTAAGCCACCTGGATACCATAGCTAGGAAGAATGGAATAGGAC-AG 7922799 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 | | ||||||||||||||| | ||| | | |||||||| ||| | || | || Sbjct 7922800 AGATCCTATTTTGTTGGTTT-TCAGACTGAGGACATGATTAAGAGGTACAGCCAGG---- 7922854 Query 212 TCAGTATTCA-ATTGT-----CAGAGGTGAAATTCTTGGA 245 || ||||| ||||| |||| ||||||||||||| Sbjct 7922855 --AGCATTCATATTGTGCCACTAGAGATGAAATTCTTGGA 7922892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915003378432