Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq163 125 3e-26 seq2 111 7e-22 seq111 102 3e-19 seq5975 100 1e-18 seq197 93.3 2e-16 >seq163 Length=4015278 Score = 125 bits (138), Expect = 3e-26 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 |||||||||||||||||||||| ||| |||||||||||||||||||||||||| || Sbjct 1478645 GAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCG 1478704 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||| |||||||||| ||||| || |||||||||||| || Sbjct 1478705 TAGCGGTCCTGATGTGCAAATCGGTCGTCTGATCTGGGTATAGGGGGGA 1478753 >seq2 Length=60928133 Score = 111 bits (122), Expect = 7e-22 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| ||||||||| ||| | || || |||||| | | ||||| ||||||| Sbjct 46294726 GAGTCGAGTTGCTTGGGAATGTAGCCCAAAGAGGTTGGTAAACTCCATCTAAGGCTAAAT 46294785 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||| || | ||||||| | | ||||| ||||||| |||||| | Sbjct 46294786 ACTGGCAAGAGACCGACAGTGAACAAGTACCATAAAGGAAAGTTGAAAAGAACTTTGAAG 46294845 Query 160 AGAGAGTTAAAAAG 173 ||||| || ||||| Sbjct 46294846 AGAGAATTCAAAAG 46294859 >seq111 Length=8591704 Score = 102 bits (112), Expect = 3e-19 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||| || ||||||||||||||||||||| |||| |||||||||||||||||| ||||| Sbjct 4749264 GGAACCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTAGTGGA 4749323 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || | |||||| ||| | | ||||||| || || | | ||||||||||| Sbjct 4749324 GGTCCATAGCGGTCCTGACATACAAATCGGTCTTCTGACCT-GGTATAGGGGC 4749375 >seq5975 Length=5881 Score = 100 bits (110), Expect = 1e-18 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || || ||| ||||||||||||||||||||| |||||||||||||||||||||| | | Sbjct 604 TTAGGGCCCAAAAGATGGTGAACTATGCCTGGGTAGGGTGAAGCCAGAGGAAACTTGGCT 663 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||| | ||| || ||| | ||||||| | | |||| |||||||||| Sbjct 664 GGAGGTCCATAGCAGTCCTGACAAGCAAATCAGTTGACAAACCTGGGTATAGG 716 >seq197 Length=2590651 Score = 93.3 bits (102), Expect = 2e-16 Identities = 114/154 (74%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | || || ||||||| Sbjct 524862 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACT-CATCCAAGGCTAAAT 524804 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||| ||| || || | ||||| ||||||| ||||| Sbjct 524803 ATCAGCATGAGACCGATAGTCAACACATACCGTAAGGGAAAGTTGAAAAGAACTTT---- 524748 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||| || || |||||||| ||| | ||| Sbjct 524747 TGAGAGTTCAAGAGGACGTGAAACCGTTAAGAGG 524714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079539168200