Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1 226 5e-57 seq14 201 2e-49 seq120 141 1e-31 seq89 141 1e-31 seq7 134 2e-29 seq85 113 7e-23 seq16737 111 3e-22 seq2 86.0 1e-14 seq58 84.2 3e-14 seq15 73.4 6e-11 >seq1 Length=79790405 Score = 226 bits (250), Expect = 5e-57 Identities = 201/248 (81%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||| Sbjct 54791792 GTCAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGGCCTGTTATTGTT- 54791850 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 | || | |||| | |||| | |||||||||||||| | |||| |||| | Sbjct 54791851 ---ATCTCGGGTAGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGACCACT 54791907 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | | || ||||| | | |||||||||||||||||||||||||||||||| Sbjct 54791908 CGGGGCTTGCG-TAACTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 54791966 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 54791967 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATC 54792026 Query 251 AATCTGTC 258 |||||||| Sbjct 54792027 AATCTGTC 54792034 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | ||||| ||| | |||||||||||| ||||||||||||||||| || Sbjct 32410733 GTCAGTGTAGCACTCGTGCATCCCTGGACATCTAAGGGCTTCACAGACCTGTTATTG-CT 32410675 Query 75 CAAACT 80 ||| || Sbjct 32410674 CAATCT 32410669 >seq14 Length=24332566 Score = 201 bits (222), Expect = 2e-49 Identities = 201/254 (79%), Gaps = 15/254 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 22161698 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 22161756 Query 75 CAAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAA------GCCAGCCACCAA 126 ||| || || |||||| | |||| | ||||||||||||| | ||| || Sbjct 22161757 CAATCT---ATGGTGGCTGAACGCCACTTGTCCCTCTAAGAATTTGGGGGATGCCGACAG 22161813 Query 127 C-CATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | || | ||| | || |||||| | | ||||| |||||||| ||||||| | Sbjct 22161814 CTCAGGGGTCGC-GTAAATAGTTAGCATGCCAGAGTCTCATTCGTTATAAGAATTAATTA 22161872 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||||| | |||| ||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 22161873 GACAAATTTCCCCACTAACTAAGAATGGCCATGCACCACCACCCATAGAATCGAGAAAGA 22161932 Query 245 GCTATCAATCTGTC 258 |||||||||||||| Sbjct 22161933 GCTATCAATCTGTC 22161946 Score = 89.7 bits (98), Expect = 8e-16 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| ||| ||| |||||||||||||||||| |||||||||||| ||| |||||||| Sbjct 16338901 TCTCATTCATTAGTGGAATTAACCAGACAAATTGCTCCACCAACTAGGAATAGCCATGCA 16338960 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||| |||| ||||| || |||| || Sbjct 16338961 CTCCCACCCATAGGGATGAGAAGGAGCTGTCCATCTATC 16338999 >seq120 Length=7134131 Score = 141 bits (156), Expect = 1e-31 Identities = 171/226 (76%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95 |||||| |||||||||| ||||||||||||||||||| |||| || | |||||| | | Sbjct 2939007 CCCAGA-CATCTAAGGGTATCACAGACCTGTTATTGC-TCAATCT-CTGGTGGCTGAATG 2939063 Query 96 CCAATAGTCCCTCTAAGAAGCCAGCCAC-CAACCAT-----AGTCGATGGGGCTATTTAG 149 ||| | |||||||||||||| | | |||||| |||| || ||| |||| Sbjct 2939064 CCACTTGTCCCTCTAAGAAGTTGGGGAATCAACCACTCAGGAGTC-ATATAACTAGTTAG 2939122 Query 150 CAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209 || | | ||| | ||| |||||| |||||||||||||||| | |||||| || |||||| Sbjct 2939123 CATGCCAGGGTTTTGTTTGTTATCAGAATTAACCAGACAAAACGCTCCACTAATTAAGAA 2939182 Query 210 CGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 | || ||||||| | | ||||| |||||||||||||| ||| Sbjct 2939183 TAGACACACACCACCCCAAACAGAATTGAGAAAGAGCTATCAGTCT 2939228 >seq89 Length=9558460 Score = 141 bits (156), Expect = 1e-31 Identities = 83/86 (97%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 173 CGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG 232 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 2144539 CGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATGG 2144480 Query 233 AATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||||||||||| Sbjct 2144479 AATCGAGAAAGAGCTATCAATCTGTC 2144454 >seq7 Length=28733031 Score = 134 bits (148), Expect = 2e-29 Identities = 185/252 (73%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA-AGGGCATCACAGACCTGTTATTGCC 73 |||||| |||| ||| ||| |||| ||||||| |||| ||||||||||||||||||| Sbjct 10077249 GTCAGTATAGCACGCATGCAGCCCCAGACATCTACAGGGAATCACAGACCTGTTATTGC- 10077191 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCAT 130 ||||||| | |||||| | | |||||||||||||| | ||| || | Sbjct 10077190 TCAAACTGGGGT-GGCTGGTCACTGCTTGTCCCTCTAAGAAGTTGGGGGACACTGACTAC 10077132 Query 131 --AGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 || | ||| ||| | |||| | | |||| | || |||| ||||| ||||| Sbjct 10077131 TCAGGGGTCATGCAACTAGTAAGCATGCCAGAGTCTTGGTCACTATCAGAATTTGCCAGA 10077072 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||| ||||||||||||| || ||||| ||||||| ||||| |||||| ||||| || Sbjct 10077071 CAAATTGCTCCACCAACTAAAAATGGCCAAGCACCACTACCCAAAGAATCGAGAAAAAGT 10077012 Query 247 TATCAATCTGTC 258 ||||||||| || Sbjct 10077011 TATCAATCTATC 10077000 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/105 (80%), Gaps = 7/105 (7%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGC---GCGTGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||||| |||| | | |||| | |||||| |||||||||||||||||||||||||| | Sbjct 14746534 GTCAGTATAGCACATTGTGTGCAGACCCAGA-CATCTAAGGGCATCACAGACCTGTTACT 14746476 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||||| | |||| | |||||||||||||| Sbjct 14746475 -ACTCAATC-TCAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 14746433 >seq85 Length=10749540 Score = 113 bits (124), Expect = 7e-23 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 ||||| ||||||||||||| ||| ||||||||| || |||||||||||||||||||| || Sbjct 3936659 GGAATGAACCAGACAAATCGCTCTACCAACTAACAATGGCCATGCACCACCACCCATGGA 3936600 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||||||||||| Sbjct 3936599 CTCGCGAAAGAGCTATCAATCTGTC 3936575 >seq16737 Length=1729 Score = 111 bits (122), Expect = 3e-22 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 || ||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 685 AAAGTCTCATTCATTATTGGAATTAACCAGACAAATCACTCCACCAACTAAGAAGAGCCA 626 Query 216 TGCACCACC-ACCCATAGAATCAAGAAA 242 ||||||||| | |||| ||||| ||||| Sbjct 625 TGCACCACCAAACCATGGAATCGAGAAA 598 >seq2 Length=60928133 Score = 86.0 bits (94), Expect = 1e-14 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 || ||||||||||| || ||| | | | |||||||| |||||||||||||||||||| Sbjct 18762534 TCAGTCAGTGTAGCATGCATGCAGGCTGGGCCATCTAAGAGCATCACAGACCTGTTATTG 18762475 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||||||| | |||||| | || | | | |||||||||||| Sbjct 18762474 -CTCAAACTTGGA-TGGCTGAATGCTACTTGCCCCTCTAAGAAG 18762433 >seq58 Length=12142327 Score = 84.2 bits (92), Expect = 3e-14 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||| |||| | || | |||||||||||||||||||||||||||||| || Sbjct 2380192 GTCAGTGTAGCGCGTGTGCAGTCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 2380250 Query 75 CAAACT 80 ||| || Sbjct 2380251 CAATCT 2380256 >seq15 Length=24491037 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||||||||||||| | ||| |||| | |||||||||||||||||||| ||||||||| Sbjct 2215673 GTCAGTGTAGCGCACATGCAGCCCTGGCCATCTAAGGGCATCACAGACTTGTTATTGC 2215730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796634165004