Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq107 259 8e-67 seq173 141 2e-31 seq17916 89.7 9e-16 seq240 80.6 5e-13 >seq107 Length=8537925 Score = 259 bits (286), Expect = 8e-67 Identities = 167/183 (91%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 4567004 CCTGTCTCACGACGGTTTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAAC 4567063 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 4567064 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGA 4567123 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||| Sbjct 4567124 TGTCGCTATGAATGCTTGACTGCCACAAGCCAGTTATCCCTGTGGTAATCTTTCTGACAC 4567183 Query 232 CTC 234 ||| Sbjct 4567184 CTC 4567186 >seq173 Length=3534699 Score = 141 bits (156), Expect = 2e-31 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||| ||||||| |||| |||||||||||||||| | || | | Sbjct 2974975 GAATTCTGCTTCACAATGATGTGAAGAGCAGACACCGAAGGATCAAAAAGCCATGTTGTT 2974916 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 | | | ||| | ||||||||||||||||||||||||| ||||||||||||||| || Sbjct 2974915 ACAACCATTTGTCCACCACAAGCCAGTTATCCCTGTGGTAGCTTTTCTGGCACCTCCTGC 2974856 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 | ||| | || | |||||||| ||||| || ||||||||| ||||| Sbjct 2974855 TTAAAACCCAAAAGGTCAAAAGGATCATGAGGCCCCATTTTCATGGTCTGTAT 2974803 >seq17916 Length=1437 Score = 89.7 bits (98), Expect = 9e-16 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 |||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||| || Sbjct 62 TGATAGAAAGGGCCAACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGC 3 Query 195 CA 196 || Sbjct 2 CA 1 >seq240 Length=1425787 Score = 80.6 bits (88), Expect = 5e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCA 81 ||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 132229 ATCAGTAGGGTTAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCA 132277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854216440704