Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq7 141 2e-31 seq1 116 7e-24 seq14 113 9e-23 seq58 84.2 4e-14 seq2 82.4 1e-13 seq15 75.2 2e-11 >seq7 Length=28733031 Score = 141 bits (156), Expect = 2e-31 Identities = 190/259 (73%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | | | | |||| | |||||||| |||||||||||||||| Sbjct 10077150 CTTCTTAGAGGGACAAGCAGTGACCAGCC-ACCCCAGTTTGAG-CAATAACAGGTCTGTG 10077207 Query 131 ATGCCCT-TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 || |||| ||||||| |||| ||| ||| |||| |||||| | || | || | | Sbjct 10077208 ATTCCCTGTAGATGTCTGGGGCTGCATGCGTGCTATACTGACTGGCTCAGCATGTGCCTA 10077267 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| || || |||| |||||| || | || ||| || | ||||||| | | ||| Sbjct 10077268 CCCTATGCTGGCAGGTGAGGGTAACCTGTTGAACCTCATTCATAATGGGGATTGCGGATT 10077327 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | || || |||| || |||||| || || || ||| |||||||| Sbjct 10077328 GCAATTATTCCCCATGAATGAAGAATTCCCAGTAAGTGCAGGTTATAAGCTTGCGTTGAT 10077387 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||| ||||||||||| Sbjct 10077388 TAAGTCCTTGCCCTTTGTA 10077406 >seq1 Length=79790405 Score = 116 bits (128), Expect = 7e-24 Identities = 131/173 (76%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||||| ||||||||||||||||||| | |||| ||||||||||||||||||| | Sbjct 54791848 CAATAACAGGCCTGTGATGCCCTTAGATGTCCAGGGCTGCACGCGCGCTACACTGACTGG 54791789 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTG 233 || | || | | ||| ||||| ||| ||||||| | | | ||||| | |||| Sbjct 54791788 CTCAGCATGTGCCTACCCTATGCCGGCAGGCATGGGTAACCC-GCTGAACTCCATTCGTG 54791730 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 |||||| | |||||||||||| | | ||||| |||| || ||||||| Sbjct 54791729 ATGGGGAACAGGGATTGCAATTATTCTCCATGAACGAAGAATTCCCAGTAAGC 54791677 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||| |||||||||||| | ||| ||||| | ||||| Sbjct 32410669 AGATTGAG-CAATAACAGGTCTGTGAAGCCCTTAGATGTCCAGGGATGCACGAGTGCTAC 32410727 Query 166 ACTGAC 171 |||||| Sbjct 32410728 ACTGAC 32410733 >seq14 Length=24332566 Score = 113 bits (124), Expect = 9e-23 Identities = 162/222 (73%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||| | ||| | |||| | || ||||| ||||||||||||||||| Sbjct 22161795 TTCTTAGAGGGACAAGTGGCGTTCAGCC-ACCATAGATTGAG-CAATAACAGGTCTGTGA 22161738 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT-CA 190 ||||||||||||| | |||| ||||||||||||||||||| | || | || | | || Sbjct 22161737 TGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCATGTGCCTACA 22161678 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | ||| || ||| |||||| | | | | | || || ||||||| | | | || Sbjct 22161677 CTATGG-AGGCAGGCACGGGTAACCCATTGAGCCCCATTCATGATGGGGATCGGGGACTG 22161619 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 |||||||| | | | ||| || ||| || |||||| ||| || Sbjct 22161618 CAATTATTCCCCATGAACTAGAAATTCCCAGTAAGTGCGAGT 22161577 >seq58 Length=12142327 Score = 84.2 bits (92), Expect = 4e-14 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | || | |||| |||||||| Sbjct 2380256 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGACTGCACACGCGCTAC 2380198 Query 166 ACTGAC 171 |||||| Sbjct 2380197 ACTGAC 2380192 >seq2 Length=60928133 Score = 82.4 bits (90), Expect = 1e-13 Identities = 171/243 (70%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||| | | || | |||| || ||||||||| |||||||||||||||| Sbjct 18762433 CTTCTTAGAGGGGCAAGTAGCATTCAGCC-ATCCAAGTTTGAG-CAATAACAGGTCTGTG 18762490 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||| |||||||| | | | ||| || ||||||||||| || | | || | | Sbjct 18762491 ATGCTCTTAGATGGCCCAGCCTGCATGCATGCTACACTGACTGACTCGGCACGTGCTTAT 18762550 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC-TCTGTCGTGCTGGGGAT-AGAGCAT 248 ||| | | || ||||||| |||||| ||| | | || ||||||| |||| || Sbjct 18762551 CCTACAGCAGTAGACATGGGTAA-CTTGTTGAACACCATTAGTAATGGGGATCAGAG-AT 18762608 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | | ||| ||| | |||||| | | |||| ||| || |||| Sbjct 18762609 TGCAATTATT-CCAATGAGGGAGCAATTC--AGTAAGTGTGGATCATAAGCTTGCATTGA 18762665 Query 309 TTA 311 ||| Sbjct 18762666 TTA 18762668 >seq15 Length=24491037 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACA 172 ||||||||| |||||||||||||||||||| | |||| ||| | |||||||||||||| Sbjct 2215730 GCAATAACAAGTCTGTGATGCCCTTAGATGGCCAGGGCTGCATGTGCGCTACACTGACA 2215672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946996503552