Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq74 338 2e-90 seq60 159 1e-36 seq107 127 7e-27 seq162 95.1 4e-17 seq290 93.3 1e-16 >seq74 Length=10783063 Score = 338 bits (374), Expect = 2e-90 Identities = 243/279 (87%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||||||| || || | | ||||||||||||| |||| Sbjct 6194159 CTCCCACTTATTCTACACCTCTCAAGTCTCTTTACCTTGCCAGACTAGAGTCAAGATCAA 6194218 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 | |||||||||||| | |||| || |||||||||||| |||||||||||||||| || | Sbjct 6194219 CGGGGTCTTCTTTCTTCACTGACTCTGCCAAGCCCGTTTCCTTGGCTGTGGTTTCCCTGG 6194278 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||| || || ||||||||| ||||||||||||||| Sbjct 6194279 ATAGTAGGTAGGGACAGTGGGAATCTCATTTATACATTCATGCATGTCACTAATTAGATG 6194338 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 || ||| |||||||||||||||||||||||||||||||||| | | ||||| | | || Sbjct 6194339 ACAAGGTATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACTGCTTACCTGTGATTCA 6194398 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 |||||||||||||| ||||||||||||||||||| |||| Sbjct 6194399 TTGAATTTCTTCAC-TTGACATTCAGAGCACTGGACAGA 6194436 >seq60 Length=13045859 Score = 159 bits (176), Expect = 1e-36 Identities = 108/121 (89%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 |||||| |||| ||||||||||| || ||||||||||||||| ||| ||| ||||||| Sbjct 1819110 TAGATGGCGAGACATTTGGCTACTTTTAGAGAGTCATAGTTAATCCTGCCATTTACCCAT 1819169 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 1819170 GCTTCATTGAATTTCTTCAGTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCA 1819229 Query 531 A 531 | Sbjct 1819230 A 1819230 Score = 84.2 bits (92), Expect = 7e-14 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA-TCA 536 |||||||||||||||||||||| ||| ||||||||||||||||||| | ||||||| ||| Sbjct 9768638 TGAATTTCTTCACTTTGACATTGAGAACACTGGGCAGAAATCACATAGTGTCAACACTCA 9768697 Query 537 C 537 | Sbjct 9768698 C 9768698 >seq107 Length=8537925 Score = 127 bits (140), Expect = 7e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 4567305 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 4567364 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 |||||||||||||||| |||||||| ||||||||| Sbjct 4567365 CAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCC 4567399 >seq162 Length=4285334 Score = 95.1 bits (104), Expect = 4e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2934628 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 2934577 >seq290 Length=698616 Score = 93.3 bits (102), Expect = 1e-16 Identities = 74/89 (83%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 442 AGTCATAGTTACTCCC----GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 |||||||| ||||||| ||| ||||||| || || || ||||||||||| |||||| Sbjct 441851 AGTCATAGATACTCCCTTCCGCCTTTTACCCTCGGTTCATTCAATTTCTTCACCTTGACA 441792 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGC 526 ||| |||||| ||||||||||||||||| Sbjct 441791 CTCAAAGCACTAGGCAGAAATCACATTGC 441763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634848693632