Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq85 235 2e-59 seq159 127 6e-27 seq114 95.1 4e-17 >seq85 Length=10749540 Score = 235 bits (260), Expect = 2e-59 Identities = 352/490 (72%), Gaps = 41/490 (8%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||||| || | ||| ||| |||||||||| | |||||||||||||| Sbjct 4524465 TATTTTTCATCACTACCCCCGTGGGTCTGGAGTGGGTAATTTACATGCCTGCTGCCTTCC 4524406 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||| | ||| | ||||||| ||||||||| | || ||||| ||| || || | Sbjct 4524405 TTGGATGAAGCAGCAGCTTCTCAGTCTCCCTCTCTGAAACTTAACCCCGATTTCCTGTCA 4524346 Query 163 CCCGTTGATACCATGGTAGGCCACTATC--CTACCATCGAAAGTTGATAGGGCAGAAATT 220 ||| | | |||||||||||| || ||| ||| ||| |||||||||| ||| ||| ||| Sbjct 4524345 CCCATGGTCACCATGGTAGGC-AC-ATCGACTAGCATTGAAAGTTGATGGGGTAGATATT 4524288 Query 221 TGAATGAACCATCGC--CGGCTCAAGGCCAT-----GCGATTCGTTAAGTTATTATGAAT 273 |||||| ||| || | | || ||||| || | ||| | | | Sbjct 4524287 TGAATGGGTCATTGCATCTCCACAGGGCCAGCACCCGCCCCCCCCCAAGCT-----GGGT 4524233 Query 274 CACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACA----------CCCC 323 || | | ||| || || ||||||||| |||| ||||| ||| || | Sbjct 4524232 CAGGAGGAAGCT--GACAGG-GTTGGTTTTG-ATCTGATAAAAACATGAATTACCCCCAC 4524177 Query 324 TTCCGAAGTCGGGGTTTTTAGC----ATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 |||| || || | | ||| |||||||||||| ||||||||||| |||||| | Sbjct 4524176 TTCCTCAGGAAGG-TGGTCAGCTCCCATGTATTAGCTCAAGAATTACCACAGTTATCGAA 4524118 Query 380 GTAGTAAGGTA-----CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 |||| | | | | | |||| ||| |||||||||||||||||||||||||||||| Sbjct 4524117 GTAGGAGAGAAGCGAGCAAACAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTT 4524058 Query 435 CACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494 ||||||| | | ||||||||||||||||||||||||||||||||||||||||| Sbjct 4524057 CACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG- 4523999 Query 495 CTACTGGCAG 504 |||||||||| Sbjct 4523998 CTACTGGCAG 4523989 >seq159 Length=4538996 Score = 127 bits (140), Expect = 6e-27 Identities = 95/110 (86%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||||||||||||||||||||| |||||||||||||| | | || Sbjct 2429449 CAAAGGAACCATAACTGATTTAATGAGCCATTTGCAGTTTCACTGTACCGGCCGTGCGTA 2429390 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 2429389 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTCCTGGCAG 2429341 >seq114 Length=8237167 Score = 95.1 bits (104), Expect = 4e-17 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || |||||| ||||| | ||||| | ||||||||| | Sbjct 1513760 ACTCATTCCAATTACGGGGCCTCAAAGAGTCCTGTGTTGTTATTTTTCATCACTACCTAC 1513819 Query 63 CC-GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 || | | | || ||| || |||| || |||||||||||||||||||||||||| Sbjct 1513820 CCAGAGCCAAGAGTGGATATTTTGGGCACCTGCTGCCTTCCTTGGATGTGGTAG 1513873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510075505664