Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq44 111 1e-19 seq35 102 6e-17 seq121 87.8 1e-12 >seq44 Length=14409287 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || ||||| || ||||| ||||| ||||| ||||| || Sbjct 13233357 GGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 13233298 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| || || | |||||| || ||||| ||||| || Sbjct 13233297 GTTGCTCTTCCGATTACAGGAATCTTTATAGAGCATGTATGGGGTGCCTGTCTCTGTCTG 13233238 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 13233237 AGACTCAATGATGGCATACCAAAG 13233214 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||| || ||||| || || || | Sbjct 13231431 CATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGTTCTTCCTT 13231372 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| ||||| |||||| || |||||||||||||| ||||| || ||||||| Sbjct 13231371 CCCTGTG-TTTTTCTTCAAGTCAAGAAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 13231313 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 13231312 AAATAGCAAA 13231303 >seq35 Length=17774785 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| |||||||| || || | ||||| || |||||||| |||||||| | Sbjct 13460859 TGGAGCGTTTCAGTCAGGAGGTACAGGTCCCAGAGGCTCGATGTTTCTATGGCTTCCAAA 13460918 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| || || || |||||||||||||||||| | || || ||||| || ||||| | Sbjct 13460919 TTCTCATCGAAAACGTTCACTCGGAGATGTACAGTTTACTAATAGATACTTATATCAGAG 13460978 Query 61376 A 61376 | Sbjct 13460979 A 13460979 >seq121 Length=6870801 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 || ||| || || ||||||||| || || ||||| | ||||||||||| || | || Sbjct 31937 GAGCCCTTACTGAGAGAGAATCCCCGCCGCTTCGTTGTCTTCCCCATCGAATACCATGAC 31878 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| |||||||| || || || || ||||||||||||| |||||||| Sbjct 31877 ATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTCTGGACGGCTGAGGAGGT 31825 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || ||||| | ||||| || |||||||| |||||||| Sbjct 30276 TGGAGCGATTTAGC-CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAA 30218 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||||||||| || | || || |||||||||||| | || || || || ||||| Sbjct 30217 ATTGCCATGGAAAACATACATTCTGAGATGTACAGTCTCCTTATTGACACTTACAT 30162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397463902285760