Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3898 134 2e-29 seq13602 82.4 1e-13 seq3266 78.8 1e-12 >seq3898 Length=956772 Score = 134 bits (148), Expect = 2e-29 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||| |||||||||| ||||||||||||||||| |||||||| Sbjct 621474 CTAGTTAGCATGCCAGAGTCTTGTTCGTTATCAGAATTAACCAGACAAATTGCTCCACCA 621533 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| |||||| ||||||||||| |||| ||||||||||||| ||||||| Sbjct 621534 ACTAAGAACCGCCATGGACCACCACCCACGGAATTGAGAAAGAGCTATCGATCTGTC 621590 >seq13602 Length=675 Score = 82.4 bits (90), Expect = 1e-13 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 31 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCT 90 ||| ||| | |||||||||||||||||||||||||||||| ||||| | || | ||||| Sbjct 553 TGCAGCCATGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATC-TCAAATGGCT 496 Query 91 GGAAGCCAATAGTCCCTCTAAGAA 114 | | ||| | ||||||||||||| Sbjct 495 GAACACCACTTGTCCCTCTAAGAA 472 >seq3266 Length=294840 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||||||||||| |||||| |||| | ||||||||||||||| ||||||||||||| Sbjct 152741 GTCAGTGTAGCGTGCGTGCAGCCCCGGACATCTAAGGGCATCTCAGACCTGTTATT 152686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795023070762