Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq222 172 9e-41 seq59927 168 1e-39 seq599 100 5e-19 seq2358 96.9 6e-18 >seq222 Length=3558424 Score = 172 bits (190), Expect = 9e-41 Identities = 137/163 (84%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 ||| |||||||||||||||||||| || | ||||||| ||||||| || ||||||||||| Sbjct 2642805 GTAAGGTAAAACTAACCTGTCTCAGGAAGATCTAAACACAGCTCATGTGCCCTATTAGTG 2642746 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||| ||| || ||||| ||| | |||||||||||| |||||| | Sbjct 2642745 GGTGAACAATCCAACTCTTGGTGAGTTCTGTTTC---ACGATAGGAAGAGCTGACATCTA 2642689 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 |||| | |||||||| ||| |||||||||||| || |||||| Sbjct 2642688 AGGA-CCAAAAGCAATGTCACTATGAACGCTTAGCCACCACAA 2642647 >seq59927 Length=617 Score = 168 bits (186), Expect = 1e-39 Identities = 139/169 (82%), Gaps = 9/169 (5%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA-----CGTCGCTATGAACGCTT 188 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 2 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAAGCGACGTCGCTAAGAACGCTT 61 Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC 248 ||| ||||||||||||||||||||||| ||||||||||| |||||| || | ||| | Sbjct 62 GGCCGCCACAAGCCAGTTATCCCTGTGATAACTTTTCTGACACCTCCTGCTTAAAACCTA 121 Query 249 GAGGGACTAAAGGATCGATAGGCCACA----CTTTCATGGTTTGTATTC 293 | || | |||||||| ||||| || |||||| ||| ||||||| Sbjct 122 AAAGGTCAGAAGGATCGTGAGGCCCCACTTGCTTTCACGGTCTGTATTC 170 >seq599 Length=1256900 Score = 100 bits (110), Expect = 5e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 56 TCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 115 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 396941 TCTCACGACGGTCTAAACCCAGTTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT 397000 >seq2358 Length=516809 Score = 96.9 bits (106), Expect = 6e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 || ||| | | |||||||||||| |||| ||||||||||||||| ||||| ||||||||| Sbjct 233786 GTGTCACGGCTGTCTAAACCCAGATCACATTCCCTATTAGTGGGGGAACATTCCAACGCT 233845 Query 115 TACCGAATTCTGCTTCGGTATGATAGGA 142 | |||||||||||| ||||||||| Sbjct 233846 TGGTGAATTCTGCTTCACAATGATAGGA 233873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852433154112