Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq714 192 2e-46 seq172 161 3e-37 seq75468 98.7 3e-18 seq59927 95.1 4e-17 seq1778 87.8 6e-15 seq34 78.8 3e-12 seq90947 75.2 4e-11 >seq714 Length=1610303 Score = 192 bits (212), Expect = 2e-46 Identities = 144/171 (84%), Gaps = 10/171 (6%) Strand=Plus/Minus Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 ||||||||||| |||||||| ||| |||| |||| |||||||||||| ||||||| |||| Sbjct 1093353 GATAGGGACAGGGGGAATCTTGTTCATCCGTTCAAGCGCGTCACTAACTAGATGATGAGG 1093294 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 ||||||||| ||||||||||| ||||||| ||||||||| || | |||| Sbjct 1093293 CATTTGGCTGCCTTAAGAGAG----------TCCCGCCATTTACCCGCAGTTCATGGAAT 1093244 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 1093243 TTCTTCACTTCGACATTCAGAGCACTGGGCAGAAATCACATGGCCTCAACA 1093193 Score = 127 bits (140), Expect = 7e-27 Identities = 108/131 (82%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||| ||| ||||||||| ||| | | |||||||||||||||||| Sbjct 1094184 CTCCCACTTATTCTTCACTTCTCAAGTCTCTTCCTGATAGCAGACTAGAGTCAAGCTCAA 1094125 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||| |||||| | |||||||||||||||||| ||| |||||||||| | Sbjct 1094124 CAGGGTCTTC-AACCCCGC---CTACGCCAAGCCCGTTCCCTTTGCTATGGTTTCGCTGG 1094069 Query 357 ATAGTAGATAG 367 | ||||||||| Sbjct 1094068 ACAGTAGATAG 1094058 >seq172 Length=1661362 Score = 161 bits (178), Expect = 3e-37 Identities = 107/118 (91%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC---CGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||| |||||||||||| |||||||| || ||| Sbjct 1155710 AGGCATTTGGCTACCTTAAGAGAGTCACAGTTACTCCCGCCGCCGTTTACCAGCACTTCA 1155769 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1155770 TTGAATTTCCTCACTTTGACATTCAGAGCACTTGGCAGAAATCACATCGCGTCAACAT 1155827 >seq75468 Length=1056 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| ||||||| |||| ||| | ||||||||| ||||| | | Sbjct 330 CTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAACTCACCTTAGGACTCCTGCATAACC 389 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||||||||| || |||| Sbjct 390 ATTTGAAAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 436 >seq59927 Length=617 Score = 95.1 bits (104), Expect = 4e-17 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| ||||||| |||| |||| | ||||||||||||||| ||| Sbjct 204 CTTCTGCTCGACAGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGCATTACC 263 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCC 98 || | |||| ||| ||||||||| |||||||| Sbjct 264 GTCTGACAGGTGTACCGCCCCAGTCAAACTCC 295 >seq1778 Length=2141473 Score = 87.8 bits (96), Expect = 6e-15 Identities = 96/126 (76%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||| |||| ||||| |||| ||||||||| | ||||| || ||||| Sbjct 296694 TAATTAGATGATGAGGTATTTGACTACACTAAGAGAGTAA----CACTCCTACCTTTTAC 296639 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 || | ||| |||||||| ||||| || | ||||| ||| || |||||||| ||||| Sbjct 296638 CCACTCTTAATTGAATTTATTCAC-TTCAAATTCATAGCTGTGAGCAGAAATAACATTCT 296580 Query 527 GTCAAC 532 ||| || Sbjct 296579 GTCTAC 296574 >seq34 Length=522766 Score = 78.8 bits (86), Expect = 3e-12 Identities = 57/65 (88%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 198908 CTCCCACTTATTCTACACCTCTCATGTC--TTCACCGTGCCAGACTAGAGTCAAGCTCAA 198965 Query 297 CAGGG 301 ||||| Sbjct 198966 CAGGG 198970 >seq90947 Length=675 Score = 75.2 bits (82), Expect = 4e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||||||||| ||| ||||| | | | |||||||||||||||||| Sbjct 61 CTCCCACTTATTCTACACCTCTCTTGTCTCTTCACCATGCCAGACTAGAGTCAAGCTCAA 2 Query 297 C 297 | Sbjct 1 C 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1631435736896