Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq222 104 7e-20 seq1524 77.0 1e-11 >seq222 Length=3558424 Score = 104 bits (114), Expect = 7e-20 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||| |||||||||||| | || |||||||||||||| | | ||| Sbjct 1978265 CAAAGGAACCATAATTGATTTAATGAGTCTTTTGCAGTTTCACTGTACTGGTCATACATA 1978324 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 ||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1978325 CTTAGACATGCATGGCTTAATCTTTGAGACAAGTGTATG-CTAC 1978367 >seq1524 Length=360011 Score = 77.0 bits (84), Expect = 1e-11 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 |||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 185129 GCCTACTGCCTTCCTTGGATGTGGTAGCTGTTTCTCAGGCTCCCTCT 185175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1506923028992