Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2307 102 6e-17 seq12441 84.2 2e-11 >seq2307 Length=4779897 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| ||| || |||||||| || | ||||| || |||||||| ||||| || | Sbjct 575135 TGGAACGGTTCAGTCAAGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 575194 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| ||||| |||||||| |||||||||||| | || || || || |||||| ||| Sbjct 575195 TTCTCATCGAGAACGTCCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCCGGG 575254 Query 61376 A 61376 | Sbjct 575255 A 575255 >seq12441 Length=306159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||| || ||||| ||||| || | Sbjct 83179 CATGAAGAGATCCGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGCTCTTCTTT 83238 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||| ||||||||||| ||||| || ||||||| Sbjct 83239 CCCTGTG-TTCTTCTTCAAGTCAAGGAATTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 83297 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 83298 AAATAGCAAA 83307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396452588437280