Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq233 159 5e-37 seq144 150 3e-34 seq16 113 7e-23 >seq233 Length=141111 Score = 159 bits (176), Expect = 5e-37 Identities = 179/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||| || |||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 10779 GTACGAAATGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 10836 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| ||||||||||||| ||||||| || Sbjct 10837 CTCGTTCATGGGGAAGAATTGCAATCCCAGATCCCCATCACGAATGGGGTTCAAAGGCTT 10896 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 10897 ACCCGTGCCTGCCGGCGGAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 10956 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 10957 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 11009 >seq144 Length=999996 Score = 150 bits (166), Expect = 3e-34 Identities = 181/239 (76%), Gaps = 13/239 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 407207 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 407150 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 |||||| | | || | ||||||| | ||| ||||||| |||| ||||| | Sbjct 407149 CTCGTTCATGGGGAAGAGTTGCAATCCCCGATCACCATCAC----AAATGGGGTTCAATG 407094 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGC-GCGC 174 ||||||| |||| ||| ||| | | || | ||| |||||||||| |||| Sbjct 407093 GGTTACCCGTGCCTGCTGGCAGAGGGTAGACACACACTGAGCCAGTCAGTGTAGCCGCGC 407034 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 407033 GTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 406976 >seq16 Length=69618829 Score = 113 bits (124), Expect = 7e-23 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 59 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA- 117 |||||||| | | || ||||||||| | ||||||||||||| ||||| | Sbjct 59214459 TCCTCGTTCATGGGGAAGAATTGCAATCCCCGATCCCCATCACGAGTGGGGTTCAACGGG 59214518 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| |||| |||| ||| | || || ||| ||||||||||||||||| Sbjct 59214519 TTACCCGCGCCTGCCGGCGGAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTG 59214578 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 59214579 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 59214633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751953849525