Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq233 161 2e-37 seq91 77.0 6e-12 >seq233 Length=141111 Score = 161 bits (178), Expect = 2e-37 Identities = 208/281 (74%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 11712 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCATTTACTTTGAAAAAATTAGAGTGT 11653 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| || | Sbjct 11652 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCAG 11594 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | | ||| | |||||||| |||||| | |||||| | Sbjct 11593 TTCTATTTTGTTGGTTTTTGGAACCAAGGCCATGATTAAGAGGGATGGCCGGGGGCATTT 11534 Query 215 GTATT---CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 ||||| | | | |||||||||||||||||| ||||| || | | |||| Sbjct 11533 GTATTGTGCCACT---AGAGGTGAAATTCTTGGACCAGCGCAAGACGGACCAGAGTGAAA 11477 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || || || |||||||||||||||| ||| |||||| Sbjct 11476 GCATTTGCCGAGAATGTTTTCATTAATCA-AGAATGAAAGT 11437 >seq91 Length=2428580 Score = 77.0 bits (84), Expect = 6e-12 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| || |||||||||||||||||| | | |||| || ||||| Sbjct 1619866 GGAATAATGGAATAGGACA-GCTGTTCTATTTTGTTGGTTTTTTGAACCGAGGTCATGAT 1619924 Query 191 TAATAGGGATAGTCGGGGG 209 ||| |||||| | ||||| Sbjct 1619925 TAAGAGGGATGGCTGGGGG 1619943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915142022080