Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq233 118 4e-24 seq117 116 2e-23 seq44 116 2e-23 seq18 114 5e-23 seq5 91.5 6e-16 seq27 77.0 1e-11 seq20 77.0 1e-11 >seq233 Length=141111 Score = 118 bits (130), Expect = 4e-24 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 7080 TTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGTAAAGCCAGAAGAAACTCTGGT 7021 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | |||||| ||| || ||||||| || | | ||||||||||||||| Sbjct 7020 GGAGGTCCATAGCGGTCCTGATGTACAAATCGGTCATTCGACCTGGGTATAGGGGCGA 6963 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | | ||| ||||||| Sbjct 7986 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATTTAAGGCTAAAT 7927 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||| |||| ||||||| || | ||||| ||||||| |||||| | Sbjct 7926 ACCGGCAGGAGACCAATAGTCAACAAGTACCGTAAGTGAAAGTTGAAAAGAACTTTGAAG 7867 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| |||| | ||| || || Sbjct 7866 AGAGAGTTCAAGAGGGCGTGAAACTGTTAAGAGGTAAACG 7827 >seq117 Length=1675309 Score = 116 bits (128), Expect = 2e-23 Identities = 88/104 (85%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||||||||||||| |||| |||||||||||||||||||||||||| || || | Sbjct 901090 ATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGAG 901031 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| |||||||||| ||||| | ||||||||||||||| Sbjct 901030 GTCCTGATGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 900987 >seq44 Length=8747943 Score = 116 bits (128), Expect = 2e-23 Identities = 88/104 (85%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||||||||||||||| ||||||||||||||||||||||||||||||| | | Sbjct 3919042 GATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCCTTATT 3918983 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||| || ||||||||||| ||||| || |||||||||||||| Sbjct 3918982 GGTCTTGACGTGCAAATCGGTCGTCCAACCTGGGTATAGGGGCG 3918939 >seq18 Length=51076971 Score = 114 bits (126), Expect = 5e-23 Identities = 97/118 (82%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| || | ||||||||||||||||||| Sbjct 6603290 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGAG-GAAGCCAGAGGAAACTCTG 6603232 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||| || ||||| ||| | ||||||| | | || || ||||||||||||| Sbjct 6603231 GTGGAGGTCCGTCGCGGTCCTGACATGCAAATTGGTAATCCAACCTGGGTATAGGGGC 6603174 >seq5 Length=88288230 Score = 91.5 bits (100), Expect = 6e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 573 CCGAAAGATGGTGAACTATGCC-TGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 ||||||||||||||| | || |||| |||||||||||||||||||||||||| Sbjct 28168302 CCGAAAGATGGTGAAAAAAAAGATGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGT 28168361 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || |||||| ||| ||||||||||| || || | ||||||| ||||| Sbjct 28168362 CCGTAGCGGTCCTGACGTGCAAATCGGTCATCTGACCTGGGTATGGGGGC 28168411 >seq27 Length=66490022 Score = 77.0 bits (84), Expect = 1e-11 Identities = 84/112 (75%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||||| ||||||||||||||||||| || | | |||||||||||| |||| Sbjct 15650386 TTAGGACCCGGGAGATGGTGAACTATGCCTGGGCAGCGCAATGCCAGAGGAAACCATGGT 15650327 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||| | | || ||| ||| ||||||| || || | || ||||||||| Sbjct 15650326 GGAAGTCCATAGTGGTCCTGATGTGCAAACCGGTCATTCAACCTGGGTATAG 15650275 >seq20 Length=37156218 Score = 77.0 bits (84), Expect = 1e-11 Identities = 92/124 (74%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||||||| || ||||| |||| |||| ||||||||| | | || | |||| |||| Sbjct 28686015 AGCATAGGCATTAGGACCTAAAAGCTGGTAAACTATGCCAGGGCAAGGCGGAGCCGGAGG 28685956 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||| || || ||| ||| | |||||| | | ||| | ||||||| Sbjct 28685955 AAACTCTGGTGGAGG-TCCTAGTGGTCCTGACATGCAAACTGGTTGTCCATCCTGGGTAT 28685897 Query 676 AGGG 679 ||| Sbjct 28685896 CGGG 28685893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079864114250