Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq233 134 6e-30 seq7 98.7 5e-19 >seq233 Length=141111 Score = 134 bits (148), Expect = 6e-30 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 8207 GGTAAAGAAACTAACCAGGATTCCCTCAGTAATGGTGAGTGAACAGGGAAGAGCCCAGCG 8148 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| ||| ||| | |||||||| |||||||||| Sbjct 8147 CCGAATCCCTGCCATGCGTCGCAGCGCGGGAAATGTGGCGTA 8106 >seq7 Length=85103860 Score = 98.7 bits (108), Expect = 5e-19 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGC 61 |||||||||||||||||||||||||||||||| | |||||| |||||||||||||| || Sbjct 4811430 GAAAAGAAACTAACCAGGATTCCCTCAGTAACAGTGAGTGAGTAGGGAAGAGCCCAGTGC 4811489 Query 62 CGAATCCCCGCC 73 | |||||| ||| Sbjct 4811490 CAAATCCCTGCC 4811501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230386316400