Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq144 230 4e-58 seq233 201 2e-49 seq16 116 6e-24 seq12 93.3 7e-17 seq2 91.5 2e-16 seq10 86.0 1e-14 seq1 78.8 1e-12 seq30 75.2 2e-11 >seq144 Length=999996 Score = 230 bits (254), Expect = 4e-58 Identities = 206/252 (82%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGC-GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 ||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 407049 GTCAGTGTAGCCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC- 406991 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA- 129 |||| || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 406990 TCAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGC 406932 Query 130 TAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | | | | | | ||| |||||| | | ||||||||| |||||||||||||||||| Sbjct 406931 TCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCATTATCGGAATTAACCAGA 406872 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 406871 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGC 406812 Query 247 TATCAATCTGTC 258 |||| ||||||| Sbjct 406811 TATCGATCTGTC 406800 >seq233 Length=141111 Score = 201 bits (222), Expect = 2e-49 Identities = 200/254 (79%), Gaps = 15/254 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 10937 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 10995 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 ||| || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 10996 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGC- 11053 Query 132 GTCGATGGGGC-------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || | ||| | || |||||| | | |||||||||||||||||||||||||| Sbjct 11054 -TC-AGGGGTCGCGTAATTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCA 11111 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||| ||||||||||||||||||| ||| ||||||||| || || | ||||||| Sbjct 11112 GACAAATCGCTCCACCAACTAAGAACGGTCATACACCACCACACACGGATTTGAGAAAGA 11171 Query 245 GCTATCAATCTGTC 258 ||||| || |||| Sbjct 11172 GCTATTGATATGTC 11185 >seq16 Length=69618829 Score = 116 bits (128), Expect = 6e-24 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 59214561 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 59214619 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||| | |||||||||||||| Sbjct 59214620 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 59214659 >seq12 Length=15306438 Score = 93.3 bits (102), Expect = 7e-17 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 2470147 AAATAACTT-ACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 2470089 Query 248 ATCAATCTGTC 258 ||| ||||||| Sbjct 2470088 ATCGATCTGTC 2470078 >seq2 Length=98408828 Score = 91.5 bits (100), Expect = 2e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 32786937 GTTATCGGAATTAACCAGACAAATCGCTCCACCAAGTAAGAACGGCCATGCACCA 32786883 >seq10 Length=37003552 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 || ||||||||||| | || ||| | |||||||||||||||||||||||||||||| Sbjct 332602 TCAGTCAGTGTAGCATACATGTAACCCTGGACATCTAAGGGCATCACAGACCTGTTATTG 332661 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | || | || |||||| | |||| | |||||||||||||| Sbjct 332662 CTCCATA--TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 332703 >seq1 Length=126672627 Score = 78.8 bits (86), Expect = 1e-12 Identities = 72/90 (80%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| ||| ||| ||||||||||||||| || |||||||| ||||||| ||||||| Sbjct 35183875 TCTCATTCATTAGTGGAATTAACCAGACAGATTGCTCCACCAGCTAAGAATAGCCATGCG 35183816 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTAT 249 | |||||||| || |||||||||||| Sbjct 35183815 TC-CCACCCATGGAGATGAGAAAGAGCTAT 35183787 >seq30 Length=41355009 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95 |||||| |||||||| ||||| |||||||||||||| ||||| ||| |||||||| Sbjct 29529081 CCCAGA-CATCTAAGAGCATCCCAGACCTGTTATTG-CTCAATCTT-GGGTGGCTGGACA 29529137 Query 96 CCAATAGTCCCTCTAAGAAG 115 ||| | |||||||||||||| Sbjct 29529138 CCACTTGTCCCTCTAAGAAG 29529157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796751100135