Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq15 170 3e-40 seq7 154 3e-35 seq233 113 8e-23 seq27 105 1e-20 >seq15 Length=35846924 Score = 170 bits (188), Expect = 3e-40 Identities = 127/149 (85%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 697253 AGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCCGCCACAAGCCAG 697312 Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 ||||||||||||||||||||||| |||||| || | ||| | || | ||||||| Sbjct 697313 TTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATC 697372 Query 265 GATAGGCCACACTTTCATGGTTTGTATTC 293 | ||||| | |||||| ||| ||||||| Sbjct 697373 GTGAGGCCCCGCTTTCACGGTCTGTATTC 697401 >seq7 Length=85103860 Score = 154 bits (170), Expect = 3e-35 Identities = 119/141 (84%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||||| |||||||||||||||||||| || | ||||||| ||||||| |||||||||||| Sbjct 14978631 CAGTAAGGTAAAACTAACCTGTCTCAGGAAGATCTAAACACAGCTCATGTTCCCTATTAG 14978572 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 ||||||||||||||||| ||| || ||||| ||| | ||||||||||| |||||| Sbjct 14978571 TGGGTGAACAATCCAACTCTTGGTGAGTTCTGTTTC---ACAATAGGAAGAGCTGACATC 14978515 Query 155 GAAGGATCAAAAAGCAACGTC 175 ||||| | |||||||| ||| Sbjct 14978514 TAAGGACCCAAAAGCAATGTC 14978494 >seq233 Length=141111 Score = 113 bits (124), Expect = 8e-23 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 ||||||||||||| |||| |||||||||||| |||||||||||| || |||||||| Sbjct 6461 GTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGATCCAACATCGAA 6520 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCT 187 |||||||||||| | ||||||||||||||| Sbjct 6521 GGATCAAAAAGCGATGTCGCTATGAACGCT 6550 >seq27 Length=66490022 Score = 105 bits (116), Expect = 1e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 || ||| | | |||||||||||| |||||||||||||||||||| |||||| || | ||| Sbjct 24437193 GTGTCACGGCTGTCTAAACCCAGATCACGTTCCCTATTAGTGGGGGAACAAGCCCATGCT 24437134 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 | ||||||| |||| |||||||||||| || ||||| || ||||| || Sbjct 24437133 TGGTGAATTCTACTTCACAATGATAGGAAGAACCAACATCAAAAAATCAAGAA 24437081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854345873760