Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq233 96.9 4e-18 >seq233 Length=141111 Score = 96.9 bits (106), Expect = 4e-18 Identities = 133/181 (73%), Gaps = 15/181 (8%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 11676 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 11617 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACC--GCCCGTAAT 127 |||||||| ||||||||| || |||||||||||| ||||| | | ||| | || || Sbjct 11616 GGAATAATGGAATAGGAC-CGCAGTTCTATTTTGTTGGTTTTTGGAACCAAGGCC---AT 11561 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATT---CAATTGTCAAAGGTGAAATTCTTGG 184 ||| || | |||| | |||||| | ||||| | | | | ||||||||||||||| Sbjct 11560 GATTAAGAGGGATGGCCGGGGGCATTTGTATTGTGCCACT---AGAGGTGAAATTCTTGG 11504 Query 185 A 185 | Sbjct 11503 A 11503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511968578400