Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq13 401 2e-109 seq10 383 5e-104 seq19 239 1e-60 seq3 206 9e-51 seq2 125 2e-26 seq4 105 2e-20 seq26 104 8e-20 >seq13 Length=46045664 Score = 401 bits (444), Expect = 2e-109 Identities = 265/295 (90%), Gaps = 9/295 (3%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||| |||||||| ||| ||||| | | | |||||||||||||||||| Sbjct 30512692 CTCCCACTTATTCTATACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGCTCAA 30512633 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||||||| || |||||||||| |||||||||||||||||||||| | Sbjct 30512632 CAAGGTCTTCTTTTCCTGCTGATTCCG---------TTCCCTTGGCTGTGGTTTCGCTGG 30512582 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 30512581 ATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGCGCGTCACTAATTAGATG 30512522 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||| Sbjct 30512521 ACGAGGCATTTGGCTACCTTAAGAGAGTCACAGTTACTGCCGCCGTTTACCGGCACTTCA 30512462 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30512461 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 30512407 >seq10 Length=37003552 Score = 383 bits (424), Expect = 5e-104 Identities = 263/297 (89%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||| |||||||| ||| ||| | | | ||||||||||| |||| Sbjct 22765393 CTCCCACTTATTCTATACCTCTCATGTCTCTTCCCTGTGCCAGACTAGAGTCAGTTTCAA 22765452 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||| || | |||||||| ||||||| ||||||||||||||||||||||||| | Sbjct 22765453 AAGGGTCTTCCTTGCTCGCTGATTTCGCCAAGGCCGTTCCCTTGGCTGTGGTTTCGCTGG 22765512 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||| | || ||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 22765513 ATAGTGGGTATGGACAGTGGAAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 22765572 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||| |||||||||||| || ||||||| ||||| | Sbjct 22765573 ACGAGGCATTTGGCTACCTTAAGAGAGTAATAGTTACTCCCACCATTTACCCACGCTTCG 22765632 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||| |||| |||||||||||||||||||||||||| || |||||| Sbjct 22765633 TTGAATTTCTTCACTATGACTTTCAGAGCACTGGGCAGAAATCACATCGCATCAACA 22765689 >seq19 Length=34839539 Score = 239 bits (264), Expect = 1e-60 Identities = 232/298 (78%), Gaps = 19/298 (6%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||| | | ||||| ||| ||| | |||||||||||| ||||| Sbjct 6551056 CTCCCACTTATTCTGCCCTTCTCACGTCTCTTCCTGGTGATAGACTAGAGTCAAACTCAA 6551115 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||| | ||| | | | |||||||||||||||| | ||||| | Sbjct 6551116 CAGGGTCCTCTCTACCCCCGGCTAA-GCCAAGCCCGTTCCCTAC-------TATCGCTGG 6551167 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTA-ATCCATTCATGCGCGTCACTAATTAGAT 415 ||||| ||||||||||||||||| ||||| || | ||||||||||||||||| ||| | Sbjct 6551168 ATAGTGGATAGGGACAGTGGGAACTTCGTTTCATGCCTTCATGCGCGTCACTAACTAGTT 6551227 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||| |||||||||||| ||||||||||||| ||||| ||||| | ||||| Sbjct 6551228 GACAAGGCATTTGGCTGCCTTAAGAGAGTC----------CCGCCATTTACTCACGCTTC 6551277 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||||||||||||| |||||||||||||| ||||||||||||||| | |||||| Sbjct 6551278 GTGGAATTTCTTCACTTCGACATTCAGAGCACGGGGCAGAAATCACATGGTCTCAACA 6551335 >seq3 Length=92994323 Score = 206 bits (228), Expect = 9e-51 Identities = 119/122 (98%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 82166299 GTCACTAATTAGATGAAGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 82166358 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82166359 TTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 82166418 Query 522 AT 523 || Sbjct 82166419 AT 82166420 >seq2 Length=98408828 Score = 125 bits (138), Expect = 2e-26 Identities = 84/94 (89%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||| |||||||| ||| ||||| | | |||||||||||||||||| Sbjct 18736274 CTCCCACTTATTCTATACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 18736333 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCC 330 ||||||||||||||||||||||||||||||| || Sbjct 18736334 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAATCC 18736367 >seq4 Length=96435083 Score = 105 bits (116), Expect = 2e-20 Identities = 99/126 (79%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||| |||| |||||||||| ||||||||| | | |||| || ||||| Sbjct 31953350 TAATTAGATGATGAGGTATTTGGCTACACTAAGAGAGTAAAA----CTCCTACCTTTTAC 31953405 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 || | ||| ||||||||||||||||| | ||||| ||| || |||||||| ||||| Sbjct 31953406 CCACTCTTAATTGAATTTCTTCACTTTAAAATTCATAGCTGTGAGCAGAAATAACATTCT 31953465 Query 527 GTCAAC 532 ||| || Sbjct 31953466 GTCTAC 31953471 >seq26 Length=66536344 Score = 104 bits (114), Expect = 8e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||| ||| Sbjct 63804605 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCATTACC 63804664 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| ||||||||| ||||| || |||| Sbjct 63804665 ATTTGACAGGTGTACCGCCCCAGTCAAACTCCCTACCTGGCACTGTC 63804711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635096410080