Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq233 412 1e-112 seq322 325 1e-86 seq844 302 1e-79 seq296 289 9e-76 seq278 262 1e-67 seq13 223 1e-55 seq23 197 4e-48 seq1 165 2e-38 seq7 95.1 4e-17 seq99 84.2 7e-14 >seq233 Length=141111 Score = 412 bits (456), Expect = 1e-112 Identities = 419/532 (79%), Gaps = 37/532 (7%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 11920 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 11979 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 11980 CCTGGGTCGGGAGTGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 12039 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||||||||||||| |||||| ||||||| | |||||| | |||||||||| Sbjct 12040 CTCAGGCTCCCTCTCCGGAATCAAACCCTGATTCCCCATCACCCGTGGTCACCATGGTAG 12099 Query 182 GC-CA-CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || || | | |||||||| ||||||||||||||||| | |||||| | |||||| | Sbjct 12100 GCACAGCGA--CTACCATCAAAAGTTGATAGGGCAGACGTGTGAATGGGTCGTCGCCGTC 12157 Query 240 -TCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGG---- 292 | |||| |||| ||| | | ||||| || ||||| ||||| || || Sbjct 12158 ATGAAGGGCATGTGATCGGCCCAAGGTTATCTAGAGTCACC---GAGCCGCGGGGGAGCT 12214 Query 293 ----GCGTTGGTTTTTTATCTAATAAATACA----CCCCTTCCG-AAG-----TCGG-GG 337 | ||||| |||| |||| |||||| || |||| ||| || |||| | Sbjct 12215 CACCGGGTTGG-TTTTGATCTGATAAATGCACGCCCCCCCCCCGCGAGGGGGTTCGGCGC 12273 Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AG----GTACT 392 | | |||||||||||||||||||||||||| |||||||| |||| | || | | Sbjct 12274 CTGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCG 12333 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 | |||| ||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 12334 ACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCG 12393 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 12394 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 12444 >seq322 Length=55817 Score = 325 bits (360), Expect = 1e-86 Identities = 405/543 (75%), Gaps = 44/543 (8%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| ||||||||||||| Sbjct 51105 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTC 51164 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || || |||| || ||||||||| | |||| ||||||||||| ||||||| || ||| Sbjct 51165 TCCAGGTTGGGAGTGAGTAATTTGCACACCTGTTGCCTTCCTTGTATGTGGTGTCCATTT 51224 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| |||||| || |||| | | | |||||||| Sbjct 51225 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCTGTCACCCATGGTCAACATGGTAG 51284 Query 182 GC-CA-CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || || | | |||||||| |||||| |||||||||| || ||||| | || || | Sbjct 51285 GCACAGCGA--CTACCATCTAAAGTTCATAGGGCAGACGTTCGAATGGGTCGTCACCACC 51342 Query 240 TC-AAGGCCATGCGATT--CGTTAAGTTATTATGAATCACC-AAGGAGCC--------CC 287 | ||| ||||||||| | | ||||| || ||||| ||| ||| | Sbjct 51343 ACGGAGGGCATGCGATTGGCCCGAGGTTATCTAGAGTCACCAAAGCTGCCGGCACCTGCT 51402 Query 288 GAAGGGCGTT-----GGT---TTTTTATCTAATAAATACA-----CCCCTTCC------- 327 | ||| | | ||| |||| |||| |||||| || |||| || Sbjct 51403 GCGGGGAGCTCACCGGGTTGGTTTTGATCTGATAAATTCATGCGTCCCCCCCCCGCGAGG 51462 Query 328 GAAGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA- 385 | ||||| | | |||||||||||||||||||||||||| |||||||| |||| | Sbjct 51463 GGGGTCGGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG 51522 Query 386 AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 || | | | |||| ||| |||||||||||||||||||||||||||| |||||||| Sbjct 51523 AGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTCTCACTGTA 51582 Query 442 TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 | | | | ||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 51583 CCGGCCGTGTGTGCTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAAG-CTACTGG 51641 Query 502 CAG 504 ||| Sbjct 51642 CAG 51644 >seq844 Length=9359 Score = 302 bits (334), Expect = 1e-79 Identities = 403/557 (72%), Gaps = 60/557 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| |||||| ||||| | ||||||||||| Sbjct 4541 ACTCATTCCAATTACAGGGCCTCGAAAGAGTGCTGTAT---TATTTTTCGTCACTACCTC 4485 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| || | || |||||||||||||| |||| |||||| |||| |||||||| || ||| Sbjct 4484 CCCGGGTTGTGAGTGGGTAATTTGCGCACCTGTTGCCTTACTTGTATGTGGTATCCATTT 4425 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||| ||||||| |||||| || ||| || | | ||| |||| Sbjct 4424 CTCAGGCTCCCTCTCCGGAATTGAACCCTGATTCCCTGTCACCTGTGGTCAACATTGTAG 4365 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-T 240 || |||||||| ||||||||||||||||| |||||||| | || || | | Sbjct 4364 GCGCGGTGACTACCATCTAAAGTTGATAGGGCAGACGTTTGAATGGGTCGTCACCACCAT 4305 Query 241 CAAGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAAGG-----------AGCCCC 287 ||| ||||||||| | | ||||| || ||||||| | ||||| Sbjct 4304 GGAGGGCATGCGATTGGCCCAAGGTTATCTAGAGTCACCAAAGCTGCCGGCGCCCGCCCC 4245 Query 288 GAAG--GGCGTTG-------------------GTTTTTTATCTAATAAATACA-----CC 321 | || || | || | |||| |||| |||||| || || Sbjct 4244 GCAGCCGGAGCTGCTGGGGAGCTCACTGGGTTGGTTTTGATCTGATAAATTCATGCGTCC 4185 Query 322 CCTTCC--------GAAGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 || || | ||||| | | |||||||||||||||||||||||||| || Sbjct 4184 CCCCCCCCACAAGGGGGGTCGGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 4125 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 4124 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 4065 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | |||||||||||||||||||||||||||||| |||| Sbjct 4064 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAG-CAAG 4006 Query 488 CATATGACTACTGGCAG 504 |||| | |||||||||| Sbjct 4005 CATAAG-CTACTGGCAG 3990 >seq296 Length=67317 Score = 289 bits (320), Expect = 9e-76 Identities = 397/553 (72%), Gaps = 55/553 (10%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||| |||||| | || | |||||| ||||||| ||||| | ||||||| |||| Sbjct 48247 TCATTCCCATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTATCTCCG 48188 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 || || ||| ||||||||||| || |||| ||||||||||| |||||||| | ||||| Sbjct 48187 CGGGTTGGGCGTGGGTAATTTGTGCACCTGTTGCCTTCCTTGTATGTGGTATCAATTTCT 48128 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||| ||||| |||||||||||| |||||| || |||||| | | |||||||||| Sbjct 48127 CAGGCTCCATCTCCAGAATCGAACCCTGATTCCCTGTCACCCGTGGTCAACATGGTAGGC 48068 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-TCA 242 |||||||||||||||||||||||||| || |||| | ||||| | | Sbjct 48067 ATGGTGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATAGGTCGTCGCCACCATGG 48008 Query 243 AGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA--------------------- 279 ||| | |||||| | | ||||| || ||||||| Sbjct 48007 AGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCTCGCCCCGC 47948 Query 280 ----GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACA------CC 321 ||||| || || | ||||| |||| |||| |||||| || || Sbjct 47947 GGTCAGAGCCGCGGGGGAGCTCACTGGGTTGG-TTTTGATCTGATAAATTCATTTGTCCC 47889 Query 322 CCTTCCGA----AGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATC 376 || ||| ||||| | | |||||||||||||||||||||||||| |||||| Sbjct 47888 CCCCGCGAGGGGGGTCGGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATC 47829 Query 377 CATGTAG--TAAG---GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431 || |||| ||| | | | |||| ||| ||||||||||||||||||||||||||| Sbjct 47828 CAAGTAGGAGAAGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAG 47769 Query 432 TTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 |||||||||| | | |||||||||||||||||||||||||| |||||||||||| Sbjct 47768 TTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTCGAGACAAGCATA 47709 Query 492 TGACTACTGGCAG 504 | |||||||||| Sbjct 47708 AG-CTACTGGCAG 47697 >seq278 Length=83823 Score = 262 bits (290), Expect = 1e-67 Identities = 352/488 (72%), Gaps = 55/488 (11%) Strand=Plus/Minus Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 |||| |||||||||||||| |||| || |||||||| |||||||| || ||||||||||| Sbjct 71861 GGGAGTGGGTAATTTGCGCACCTGTTGTCTTCCTTGTATGTGGTATCCATTTCTCAGGCT 71802 Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 |||||||||||||| |||| | |||||| || |||||| | | |||||||||| Sbjct 71801 CCCTCTCCGGAATCAAACCATGATTCCCTGTCACCCGTGGTCAACATGGTAGGCACGGCG 71742 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA-AGGCCA 248 |||||||| ||||||||||||||||| || || || ||||||| | || ||| || Sbjct 71741 ACTACCATCTAAAGTTGATAGGGCAGATGTT-GAGTGGGTCATCGCCACCACAGAGGGCA 71683 Query 249 TGCGATTCG--TTAAGTTATTATGAATCACCAA-------GGAGCC----------CCGA 289 ||||||| | | | ||||| || ||| ||| || ||| ||| Sbjct 71682 TGCGATTGGCCTGAGGTTATCTAGAGTCATCAAAGCTGCCGGTGCCTGCCCTGCAGCCGG 71623 Query 290 AG-------GGCGTT-----GGTT---TTTTATCTAATAAATACAC------CCCTTCCG 328 || || | | |||| ||| |||| |||||| ||| ||| ||| Sbjct 71622 AGCCTCTGGGGAGCTCATCGGGTTGGTTTTGATCTGATAAATTCACGCATCCCCCCCCCG 71563 Query 329 AAGTCGGGGTT-------TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT 381 ||||| || |||||||||||||||||||||| ||| |||||||| || Sbjct 71562 CGAGGGGGGTCGGCACCCTTCGGCATGTATTAGCTCTAGAATTATCACAGTTATCCAAGT 71503 Query 382 AGTAAGGTA-----CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA 436 || | | | | | |||| ||| |||||||||||||||| ||||||||||||||| Sbjct 71502 AGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGATCCATTCGCAGTTTCA 71443 Query 437 CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 496 ||||| | ||||||||||||||||||||||||||||||||||||||||| | || Sbjct 71442 CTGTACTGGCCATGTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAAG-CT 71384 Query 497 ACTGGCAG 504 |||||||| Sbjct 71383 ACTGGCAG 71376 >seq13 Length=46045664 Score = 223 bits (246), Expect = 1e-55 Identities = 204/255 (80%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| ||||||| ||||| | ||||||||||| Sbjct 65826 ACTCATTCCAATTACAGGGCCTTGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 65885 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| || |||| ||||||||||| || |||| ||||||||||| |||||||| || ||| Sbjct 65886 CCCAGGTTGGGAGTGGGTAATTTGTGCACCTGTTGCCTTCCTTGTATGTGGTATCCATTT 65945 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||| |||||||||| |||||||||||| |||||| || |||| | | | |||||||| Sbjct 65946 CTCAGTCTCCCTCTCCAGAATCGAACCCTGATTCCCTGTCACCCATGGTCAACATGGTAG 66005 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || |||| ||||||| | | Sbjct 66006 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCAAATGGGTCATCGCCACCAC 66065 Query 242 -AAGGCCATGCGATT 255 ||| ||||||||| Sbjct 66066 GGAGGGCATGCGATT 66080 >seq23 Length=58015819 Score = 197 bits (218), Expect = 4e-48 Identities = 132/146 (90%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 6 CATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 || || ||||||| | || | |||||| ||||||| ||||| | |||||||||||||| Sbjct 35342527 CAATCAAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCC 35342468 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35342467 GGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 35342408 Query 125 AGGCTCCCTCTCCGGAATCGAACCCT 150 |||||||||||||||||||||||||| Sbjct 35342407 AGGCTCCCTCTCCGGAATCGAACCCT 35342382 >seq1 Length=126672627 Score = 165 bits (182), Expect = 2e-38 Identities = 119/135 (88%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||| |||||||| || | | |||||| ||||||| ||||| | ||||||||||| Sbjct 97028517 ACTCATTTCAATTACAGAGGCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 97028576 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 97028577 CCGG-GTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCTGTTT 97028635 Query 122 CTCAGGCTCCCTCTC 136 ||||||||||||||| Sbjct 97028636 CTCAGGCTCCCTCTC 97028650 >seq7 Length=85103860 Score = 95.1 bits (104), Expect = 4e-17 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||| |||||| ||||| | || |||||||||||||| | | ||| Sbjct 14363024 CAAAGGAACCATAATTGATTTGATGAGTCTTTTGCAGTTTCACTGTACTGGTCATACATA 14363083 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 ||||||||||| ||||||||||||||||||||| |||| |||| Sbjct 14363084 CTTAGACATGCTTGGCTTAATCTTTGAGACAAGTGTATG-CTAC 14363126 >seq99 Length=2091047 Score = 84.2 bits (92), Expect = 7e-14 Identities = 77/96 (80%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| |||||| ||||| | |||||||||| Sbjct 758426 ACTCATTCCAATTACAGGGCCTCGAAAGAGTTCTGTATTGTTATTTTTCATCACTACCTC 758485 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGC 97 |||| ||| | |||||||||| || ||||||||| Sbjct 758486 CCCGGGTCAAAAGTGGGTAATTTTCGAGCCTGCTGC 758521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510304316160