Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 246 2e-60 seq26 140 3e-28 seq87 129 5e-25 seq73 120 2e-22 seq61 111 1e-19 seq42 109 4e-19 >seq4 Length=96435083 Score = 246 bits (272), Expect = 2e-60 Identities = 598/896 (67%), Gaps = 11/896 (1%) Strand=Plus/Minus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| ||||| || | ||||| | || |||||||| || | ||||| |||| ||||| Sbjct 65464803 AGAAAATCCCCGCCACTTCGTGGTCTTTCCCATCGAATACCATGATATCTGGCAGATGTA 65464744 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 ||| || || || |||||||||||||||| ||||||||||| | ||||| || || | Sbjct 65464743 CAAGAAAGCCGAGGCTTCCTTCTGGACGGCTGAGGAGGTCGACCTCTCCAAGGATATTCA 65464684 Query 61161 TGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCT 61219 |||||| |||| | | || || |||||| || || || |||| |||| Sbjct 65464683 ACACTGGGAAGCGCTGA-AACCCGACGAGAGACATTTTATATCTCACGTCCTGGCTTTCT 65464625 Query 61220 TTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGC 61279 |||| || || || || |||||||| || | |||| || ||| || || || | Sbjct 65464624 TTGCTGCGAGTGATGGCATAGTCAATGAAAACCTGGTGGAGCGCTTCAGCCAAGAAGTTC 65464565 Query 61280 AAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT-CCACTCG 61338 | || | ||||| || |||||||| |||||||| ||||||||||| || | || || Sbjct 65464564 AGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATAACATTCT 65464505 Query 61339 GAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTG 61398 || ||||||||| | ||||||||||| ||||| | || || | ||| | Sbjct 65464504 GAAATGTACAGTCTCCTCATCGATACTTACATTAAAGATTCCAAAGAGAGGGAATATCTC 65464445 Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||| || ||||| || || ||||| ||| || || |||||| | |||| Sbjct 65464444 TTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCCGACTGGGCCCTGCGTTGG 65464385 Query 61459 ATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 || | |||| | ||||| | ||| |||||| | |||| ||||| | || || | Sbjct 65464384 AT-TGGGGGACAAAGAAGCTACCTATGGAGAACGAGTTGTGGCCTTTGCTGCTGTGGAAG 65464326 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | | ||| ||| || |||| |||| || ||| | |||||||| ||||| |||| Sbjct 65464325 GGATCCTCTTCTCTGGCTCCTTTGTGTCAATATTCTGGCTCAAGAAACGGGGACTGATGC 65464266 Query 61577 CCGGTCTGACCTTCAGCAATGAG-TTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 | || || || || ||| ||| || || || | || ||||| | || ||| ||| Sbjct 65464265 CTGGCCTTACGTTTTCCAACGAGCTTATTAGCA-GAGATGAGGGTTTACACTGTTGCTTT 65464207 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 || || | |||| | | ||||| | ||| ||||| | | || || Sbjct 65464206 GCCTGCCTGATGTTCA---GGCACCTGGTACACAAGCCGCCGGAGCAAAGAGTACAAGAA 65464150 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 || || | || || | | || ||||| ||||| || || || |||| || Sbjct 65464149 ATCATTATCAACGCAGTGAGGCTAGAGCAGGAGTTTCTCACGGAGGCCCTGCCTGTGAAG 65464090 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 |||||||| ||||| || | || ||| |||||| || ||||| || || ||| | || Sbjct 65464089 CTCATCGGGATGAACTGCGCCCTGATGAAGCAGTACATCGAATTCGTGGCGGACAGGCTT 65464030 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 || | || | || | | ||| | || |||| |||||||| |||||||| Sbjct 65464029 ATGCTGGAGCTAGGGTTCAGCAAGATTTTCAAAGTAGAAAATCCATTTGACTTCATGGAA 65463970 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | ||||| || || || ||||| || || || ||||| || || ||||| ||||| Sbjct 65463969 AATATTTCACTAGAAGGAAAGACAAACTTCTTTGAGAAGCGAGTGGGCGAGTATCA 65463914 >seq26 Length=66536344 Score = 140 bits (154), Expect = 3e-28 Identities = 585/912 (64%), Gaps = 16/912 (2%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| ||| || || ||| |||| | | ||||| | || ||||| || || | | Sbjct 31520029 ATGAGCCCTTACTGAGAGAAAATCGCCACCACTTCGTTGTCTTTCCCATTGAATACCATG 31519970 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| |||||||| || || || || | ||||||||| | || ||||| || Sbjct 31519969 ATATCTGGCAGATGTACAAGAAAGCCGAGGCCTTCTTCTGGACAGCTGACGAGGTGGACC 31519910 Query 61145 TGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACA-ACATTTCATTAA 61202 | ||||| || || | ||| ||| ||| | | | | | | | |||||| || Sbjct 31519909 TCTCCAAGGATATTCAACACTAGGAAGCGCTGAA--ACCTGACGAGAGACATTTTATATC 31519852 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || |||| |||||||| || || || || |||||||| || | |||| || Sbjct 31519851 TCACGTCCTGGCTTTCTTTGCAGCCAGTGATGGCATAGTCAATGAAAACCTGGTGGAGCG 31519792 Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || || || || || || | ||||| || |||||||| |||||||| ||||||| Sbjct 31519791 CTTTAGC-CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCA 31519733 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || || || || ||||||||| | ||||| || |||| | || Sbjct 31519732 TGGAAAACAAACATTCTGAAATGTACAGTCTCCTCATTGA----CACATTAAAGATTCCA 31519677 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 || | ||| | |||||||| || ||||| || || ||||| | | || | Sbjct 31519676 AAGAGAGGGAATATCTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGTAGGCTG 31519617 Query 61442 ATTGGGCCTTCAATTGGATCACCAG-TACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 | |||||| | |||||| || | || | |||| | ||| ||| || | |||| Sbjct 31519616 ACTGGGCCCTGCGTTGGATTTGGAGACAAAAAGACTACCTATGGAGAAAGAGTTGTGGCC 31519557 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | || || | | || ||| ||| || ||||| |||| || ||| | ||| Sbjct 31519556 TTTGCTGCTGTAGAAGACATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGGCTCAAG 31519497 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG-TTGATATCACGCGACGAGGG 61619 |||| ||||| ||||| || || || || ||| ||| || || || | || ||| | Sbjct 31519496 AAACAGGGACTGATGCCTGGCCTTACATTTTCCAAAGAGCTTATTAGCA-GAGATGAGCG 31519438 Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA 61679 | || |||| ||||| || | |||| | | ||||| | ||| | || Sbjct 31519437 TTTACACTGTGGCTTTGCCTGCCTGATGTTCA---GGCACCTGGTAAGCAAGCCGCCAGA 31519381 Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 | | | || || || || | || || | || | |||| ||||| || || Sbjct 31519380 GCAAAGAGTACAAGAAATCATTATCAACGCAGTGAGGATAAAGCAGGTGTTTCTCACGGA 31519321 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 || |||| || |||||| | ||||| || || ||| || ||| || ||||| Sbjct 31519320 GGCCCTGCCTGTGAAGCTCATCAGGATGAACTGCACCCTCATGAAGCGGTACATCGAATT 31519261 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859 || |||||| || || | || | || | | ||| | || |||| || Sbjct 31519260 CGTGGCCGACACGCTTATGCTGGAGCTAGGGTTCAGCAAGATTTCCAAAGTAGAAAATCC 31519201 Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919 ||||| ||| |||| | ||||| || || || ||||| || || | ||||| || || Sbjct 31519200 TTTTGACTTCGTGGAAAATATTTCACTAGAAGGGAAGACAAACTTCCTTGAGAAGCGAGT 31519141 Query 61920 AGGCGACTATCA 61931 || || ||||| Sbjct 31519140 GGGTGAGTATCA 31519129 >seq87 Length=2570995 Score = 129 bits (142), Expect = 5e-25 Identities = 354/534 (66%), Gaps = 9/534 (2%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| ||| || || ||| ||||| || || ||| | | || || |||||||| | | Sbjct 1819729 ATGAGCCCTTACTGAGAGAAAATCCCCGCCGCTTCCTTGTCTTTCCTATCGAGTACCATG 1819670 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| | |||||| || || || || |||||||||| || |||||||| || Sbjct 1819669 ATATCTGGCAGA-GTACAAGAAAGCCGAGGCCTCCTTCTGGATGGCTGAGGAGGTGGACC 1819611 Query 61145 TGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 | ||||| || || | ||||||| ||| | | || || |||||| || Sbjct 1819610 TCTCCAAGGATATTCAACACTGGGAAGCGCTGAAACC-CGACGAGAGACATTTTATATCC 1819552 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG- 61262 || || |||| ||||||| | || || | |||||||| ||| | | || | Sbjct 1819551 CACGTCCTGGCTTTCTTTGTGACGAGTGATGGATTAGTCAATGAAAATCTGGTCGAGTGC 1819492 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| || || || || || || | ||||| | |||||||| |||||||| |||||||| Sbjct 1819491 TTTAGC-CAAGAAGTTCAGGTTACAGAGGCCAGCTGTTTCTATGGCTTCCAAATTGCCAT 1819433 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| || | || || || ||||||||| | ||||| | || ||||| | || Sbjct 1819432 GGAAAACATACATTCTGAAATGTACAGTCTCCTCATTGTCACCTACATTAAAGATTCCAA 1819373 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 || | ||| | ||||||| || ||||| || || ||||| ||| || || Sbjct 1819372 AGAGAGGGAATATCTTGTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCCGA 1819313 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCA 61500 ||| || | ||||||| | |||| | ||||| | ||| |||||| | || | Sbjct 1819312 CTGGACCGTGCATTGGAT--TGGGGACAAAGATGCTACCTATGGAGAACGAGTTGTGACC 1819255 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 ||||| | || || || | || ||| ||| || |||| |||| || ||| Sbjct 1819254 TTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGTGTCAATATTCTGG 1819201 >seq73 Length=3316092 Score = 120 bits (132), Expect = 2e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || || || || ||||| ||||||||||| ||||| || Sbjct 2392956 GGTATACTCTACTATTTCTGTACATAGGTTGCTGCATTTTATGGTGCCCAGGTTCTGCTG 2392897 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | |||||| || ||||| ||||| || Sbjct 2392896 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTCTGTCTG 2392837 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||||| |||||| Sbjct 2392836 AGACTCAATGATGGCGTACCAAAG 2392813 Score = 93.3 bits (102), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||| || ||||| ||||| || | Sbjct 2391253 CATGAAGAGATCCGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGCTCTTCCTT 2391194 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| |||||| || ||||||| Sbjct 2391193 CCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAATGCCAAGGCTCCAGGT 2391135 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 2391134 AAATAGCAAA 2391125 >seq61 Length=4506808 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| ||| || ||||||||||| | ||||| || |||||||| ||||| || | Sbjct 582114 TGGAACGGTTCAGTCAAGAGGTGCAAGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 582173 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||||||||| |||||||||||| | || || || || |||||| ||| Sbjct 582174 TTCTCATCGAGAATGTCCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCCGGG 582233 Query 61376 A 61376 | Sbjct 582234 A 582234 >seq42 Length=9663327 Score = 109 bits (120), Expect = 4e-19 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| ||| || || ||| ||||| || || ||||| | || |||||||| || | | Sbjct 3434336 ATGAGCCCTTACTGAGAGAAAATCCCCGCCGCTTCGTGGTCTTTCCCATCGAATACCATG 3434395 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| |||||||| || || || |||||||||||||||| ||||||||||| Sbjct 3434396 ATATCTGGCAGATGTACAAGAAAGCCGAGGCTTCCTTCTGGACGGCTGAGGAGGTCGACC 3434455 Query 61145 TGTCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 | ||||| || || | |||||| |||| | | || || |||||| || Sbjct 3434456 TCTCCAAGGATATTCAACACTGGGAAGCGCTGA-AACCCGACGAGAGACATTTTATATCT 3434514 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAA 61250 || || |||| |||||||| ||| || || || |||||||| || Sbjct 3434515 CACGTCCTGGCTTTCTTTGCGGCTAGTGATGGCATAGTCAATGAAAA 3434561 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || || || | ||||| || |||||||| |||||||| Sbjct 3435285 TGGAGCGCTTTAGC-CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAA 3435343 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||||||||||| || | || || || ||||||||| | ||||||||||| ||||| Sbjct 3435344 ATTGCCATGGAAAACATACATTCTGAAATGTACAGTCTCCTCATCGATACTTACAT 3435399 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||||| || |||||||| |||||||| ||||||||||| || | || || || |||||| Sbjct 3436203 GAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAC 3436262 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| | ||||||||||| ||||| Sbjct 3436263 AGTCTCCTCATCGATACTTACAT 3436285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397537304644400