Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07]
6,335 sequences; 2,287,340,943 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4 246 2e-60
seq26 140 3e-28
seq87 129 5e-25
seq73 120 2e-22
seq61 111 1e-19
seq42 109 4e-19
>seq4
Length=96435083
Score = 246 bits (272), Expect = 2e-60
Identities = 598/896 (67%), Gaps = 11/896 (1%)
Strand=Plus/Minus
Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100
||| ||||| || | ||||| | || |||||||| || | ||||| |||| |||||
Sbjct 65464803 AGAAAATCCCCGCCACTTCGTGGTCTTTCCCATCGAATACCATGATATCTGGCAGATGTA 65464744
Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160
||| || || || |||||||||||||||| ||||||||||| | ||||| || || |
Sbjct 65464743 CAAGAAAGCCGAGGCTTCCTTCTGGACGGCTGAGGAGGTCGACCTCTCCAAGGATATTCA 65464684
Query 61161 TGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCT 61219
|||||| |||| | | || || |||||| || || || |||| ||||
Sbjct 65464683 ACACTGGGAAGCGCTGA-AACCCGACGAGAGACATTTTATATCTCACGTCCTGGCTTTCT 65464625
Query 61220 TTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGC 61279
|||| || || || || |||||||| || | |||| || ||| || || || |
Sbjct 65464624 TTGCTGCGAGTGATGGCATAGTCAATGAAAACCTGGTGGAGCGCTTCAGCCAAGAAGTTC 65464565
Query 61280 AAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT-CCACTCG 61338
| || | ||||| || |||||||| |||||||| ||||||||||| || | || ||
Sbjct 65464564 AGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATAACATTCT 65464505
Query 61339 GAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTG 61398
|| ||||||||| | ||||||||||| ||||| | || || | ||| |
Sbjct 65464504 GAAATGTACAGTCTCCTCATCGATACTTACATTAAAGATTCCAAAGAGAGGGAATATCTC 65464445
Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458
|||||||| || ||||| || || ||||| ||| || || |||||| | ||||
Sbjct 65464444 TTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCCGACTGGGCCCTGCGTTGG 65464385
Query 61459 ATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516
|| | |||| | ||||| | ||| |||||| | |||| ||||| | || || |
Sbjct 65464384 AT-TGGGGGACAAAGAAGCTACCTATGGAGAACGAGTTGTGGCCTTTGCTGCTGTGGAAG 65464326
Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576
| | | ||| ||| || |||| |||| || ||| | |||||||| ||||| ||||
Sbjct 65464325 GGATCCTCTTCTCTGGCTCCTTTGTGTCAATATTCTGGCTCAAGAAACGGGGACTGATGC 65464266
Query 61577 CCGGTCTGACCTTCAGCAATGAG-TTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635
| || || || || ||| ||| || || || | || ||||| | || ||| |||
Sbjct 65464265 CTGGCCTTACGTTTTCCAACGAGCTTATTAGCA-GAGATGAGGGTTTACACTGTTGCTTT 65464207
Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695
|| || | |||| | | ||||| | ||| ||||| | | || ||
Sbjct 65464206 GCCTGCCTGATGTTCA---GGCACCTGGTACACAAGCCGCCGGAGCAAAGAGTACAAGAA 65464150
Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755
|| || | || || | | || ||||| ||||| || || || |||| ||
Sbjct 65464149 ATCATTATCAACGCAGTGAGGCTAGAGCAGGAGTTTCTCACGGAGGCCCTGCCTGTGAAG 65464090
Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815
|||||||| ||||| || | || ||| |||||| || ||||| || || ||| | ||
Sbjct 65464089 CTCATCGGGATGAACTGCGCCCTGATGAAGCAGTACATCGAATTCGTGGCGGACAGGCTT 65464030
Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875
|| | || | || | | ||| | || |||| |||||||| ||||||||
Sbjct 65464029 ATGCTGGAGCTAGGGTTCAGCAAGATTTTCAAAGTAGAAAATCCATTTGACTTCATGGAA 65463970
Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
| ||||| || || || ||||| || || || ||||| || || ||||| |||||
Sbjct 65463969 AATATTTCACTAGAAGGAAAGACAAACTTCTTTGAGAAGCGAGTGGGCGAGTATCA 65463914
>seq26
Length=66536344
Score = 140 bits (154), Expect = 3e-28
Identities = 585/912 (64%), Gaps = 16/912 (2%)
Strand=Plus/Minus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
|||| ||| || || ||| |||| | | ||||| | || ||||| || || | |
Sbjct 31520029 ATGAGCCCTTACTGAGAGAAAATCGCCACCACTTCGTTGTCTTTCCCATTGAATACCATG 31519970
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144
|||| |||| |||||||| || || || || | ||||||||| | || ||||| ||
Sbjct 31519969 ATATCTGGCAGATGTACAAGAAAGCCGAGGCCTTCTTCTGGACAGCTGACGAGGTGGACC 31519910
Query 61145 TGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACA-ACATTTCATTAA 61202
| ||||| || || | ||| ||| ||| | | | | | | | |||||| ||
Sbjct 31519909 TCTCCAAGGATATTCAACACTAGGAAGCGCTGAA--ACCTGACGAGAGACATTTTATATC 31519852
Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262
|| || |||| |||||||| || || || || |||||||| || | |||| ||
Sbjct 31519851 TCACGTCCTGGCTTTCTTTGCAGCCAGTGATGGCATAGTCAATGAAAACCTGGTGGAGCG 31519792
Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321
||| || || || || || || | ||||| || |||||||| |||||||| |||||||
Sbjct 31519791 CTTTAGC-CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCA 31519733
Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381
|||| || || || || ||||||||| | ||||| || |||| | ||
Sbjct 31519732 TGGAAAACAAACATTCTGAAATGTACAGTCTCCTCATTGA----CACATTAAAGATTCCA 31519677
Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441
|| | ||| | |||||||| || ||||| || || ||||| | | || |
Sbjct 31519676 AAGAGAGGGAATATCTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGTAGGCTG 31519617
Query 61442 ATTGGGCCTTCAATTGGATCACCAG-TACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500
| |||||| | |||||| || | || | |||| | ||| ||| || | ||||
Sbjct 31519616 ACTGGGCCCTGCGTTGGATTTGGAGACAAAAAGACTACCTATGGAGAAAGAGTTGTGGCC 31519557
Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560
||||| | || || | | || ||| ||| || ||||| |||| || ||| | |||
Sbjct 31519556 TTTGCTGCTGTAGAAGACATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGGCTCAAG 31519497
Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG-TTGATATCACGCGACGAGGG 61619
|||| ||||| ||||| || || || || ||| ||| || || || | || ||| |
Sbjct 31519496 AAACAGGGACTGATGCCTGGCCTTACATTTTCCAAAGAGCTTATTAGCA-GAGATGAGCG 31519438
Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA 61679
| || |||| ||||| || | |||| | | ||||| | ||| | ||
Sbjct 31519437 TTTACACTGTGGCTTTGCCTGCCTGATGTTCA---GGCACCTGGTAAGCAAGCCGCCAGA 31519381
Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739
| | | || || || || | || || | || | |||| ||||| || ||
Sbjct 31519380 GCAAAGAGTACAAGAAATCATTATCAACGCAGTGAGGATAAAGCAGGTGTTTCTCACGGA 31519321
Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799
|| |||| || |||||| | ||||| || || ||| || ||| || |||||
Sbjct 31519320 GGCCCTGCCTGTGAAGCTCATCAGGATGAACTGCACCCTCATGAAGCGGTACATCGAATT 31519261
Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859
|| |||||| || || | || | || | | ||| | || |||| ||
Sbjct 31519260 CGTGGCCGACACGCTTATGCTGGAGCTAGGGTTCAGCAAGATTTCCAAAGTAGAAAATCC 31519201
Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919
||||| ||| |||| | ||||| || || || ||||| || || | ||||| || ||
Sbjct 31519200 TTTTGACTTCGTGGAAAATATTTCACTAGAAGGGAAGACAAACTTCCTTGAGAAGCGAGT 31519141
Query 61920 AGGCGACTATCA 61931
|| || |||||
Sbjct 31519140 GGGTGAGTATCA 31519129
>seq87
Length=2570995
Score = 129 bits (142), Expect = 5e-25
Identities = 354/534 (66%), Gaps = 9/534 (2%)
Strand=Plus/Minus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
|||| ||| || || ||| ||||| || || ||| | | || || |||||||| | |
Sbjct 1819729 ATGAGCCCTTACTGAGAGAAAATCCCCGCCGCTTCCTTGTCTTTCCTATCGAGTACCATG 1819670
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144
|||| |||| | |||||| || || || || |||||||||| || |||||||| ||
Sbjct 1819669 ATATCTGGCAGA-GTACAAGAAAGCCGAGGCCTCCTTCTGGATGGCTGAGGAGGTGGACC 1819611
Query 61145 TGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203
| ||||| || || | ||||||| ||| | | || || |||||| ||
Sbjct 1819610 TCTCCAAGGATATTCAACACTGGGAAGCGCTGAAACC-CGACGAGAGACATTTTATATCC 1819552
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG- 61262
|| || |||| ||||||| | || || | |||||||| ||| | | || |
Sbjct 1819551 CACGTCCTGGCTTTCTTTGTGACGAGTGATGGATTAGTCAATGAAAATCTGGTCGAGTGC 1819492
Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322
||| || || || || || || | ||||| | |||||||| |||||||| ||||||||
Sbjct 1819491 TTTAGC-CAAGAAGTTCAGGTTACAGAGGCCAGCTGTTTCTATGGCTTCCAAATTGCCAT 1819433
Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382
||| || | || || || ||||||||| | ||||| | || ||||| | ||
Sbjct 1819432 GGAAAACATACATTCTGAAATGTACAGTCTCCTCATTGTCACCTACATTAAAGATTCCAA 1819373
Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442
|| | ||| | ||||||| || ||||| || || ||||| ||| || ||
Sbjct 1819372 AGAGAGGGAATATCTTGTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCCGA 1819313
Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCA 61500
||| || | ||||||| | |||| | ||||| | ||| |||||| | || |
Sbjct 1819312 CTGGACCGTGCATTGGAT--TGGGGACAAAGATGCTACCTATGGAGAACGAGTTGTGACC 1819255
Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554
||||| | || || || | || ||| ||| || |||| |||| || |||
Sbjct 1819254 TTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGTGTCAATATTCTGG 1819201
>seq73
Length=3316092
Score = 120 bits (132), Expect = 2e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| || || || || ||||| ||||||||||| ||||| ||
Sbjct 2392956 GGTATACTCTACTATTTCTGTACATAGGTTGCTGCATTTTATGGTGCCCAGGTTCTGCTG 2392897
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | |||||| || ||||| ||||| ||
Sbjct 2392896 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCCGTCTCTGTCTG 2392837
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||||| ||||||
Sbjct 2392836 AGACTCAATGATGGCGTACCAAAG 2392813
Score = 93.3 bits (102), Expect = 3e-14
Identities = 100/130 (77%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || ||||| || ||||| || || |||||||||| || ||||| ||||| || |
Sbjct 2391253 CATGAAGAGATCCGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGCTCTTCCTT 2391194
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || |||||| ||||||||||||||||| |||||| || |||||||
Sbjct 2391193 CCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAATGCCAAGGCTCCAGGT 2391135
Query 66459 AGATGGCGAA 66468
| || || ||
Sbjct 2391134 AAATAGCAAA 2391125
>seq61
Length=4506808
Score = 111 bits (122), Expect = 1e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
||||||| ||| || ||||||||||| | ||||| || |||||||| ||||| || |
Sbjct 582114 TGGAACGGTTCAGTCAAGAGGTGCAAGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 582173
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
|| ||| |||||||||||||| |||||||||||| | || || || || |||||| |||
Sbjct 582174 TTCTCATCGAGAATGTCCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCCGGG 582233
Query 61376 A 61376
|
Sbjct 582234 A 582234
>seq42
Length=9663327
Score = 109 bits (120), Expect = 4e-19
Identities = 162/227 (71%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
|||| ||| || || ||| ||||| || || ||||| | || |||||||| || | |
Sbjct 3434336 ATGAGCCCTTACTGAGAGAAAATCCCCGCCGCTTCGTGGTCTTTCCCATCGAATACCATG 3434395
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144
|||| |||| |||||||| || || || |||||||||||||||| |||||||||||
Sbjct 3434396 ATATCTGGCAGATGTACAAGAAAGCCGAGGCTTCCTTCTGGACGGCTGAGGAGGTCGACC 3434455
Query 61145 TGTCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203
| ||||| || || | |||||| |||| | | || || |||||| ||
Sbjct 3434456 TCTCCAAGGATATTCAACACTGGGAAGCGCTGA-AACCCGACGAGAGACATTTTATATCT 3434514
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAA 61250
|| || |||| |||||||| ||| || || || |||||||| ||
Sbjct 3434515 CACGTCCTGGCTTTCTTTGCGGCTAGTGATGGCATAGTCAATGAAAA 3434561
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/116 (78%), Gaps = 2/116 (2%)
Strand=Plus/Plus
Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314
|||| || ||| || || || || || || | ||||| || |||||||| ||||||||
Sbjct 3435285 TGGAGCGCTTTAGC-CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAA 3435343
Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
||||||||||| || | || || || ||||||||| | ||||||||||| |||||
Sbjct 3435344 ATTGCCATGGAAAACATACATTCTGAAATGTACAGTCTCCTCATCGATACTTACAT 3435399
Score = 87.8 bits (96), Expect = 1e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347
||||| || |||||||| |||||||| ||||||||||| || | || || || ||||||
Sbjct 3436203 GAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAC 3436262
Query 61348 AGTGTTCTCATCGATACGTACAT 61370
||| | ||||||||||| |||||
Sbjct 3436263 AGTCTCCTCATCGATACTTACAT 3436285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397537304644400
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