Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28]
3,162 sequences; 2,553,112,587 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq2800 279 8e-73
seq23 87.8 3e-15
>seq2800
Length=3960
Score = 279 bits (308), Expect = 8e-73
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 429 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 372
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 371 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 312
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||| |||||||||| || |||| || | | |||||||||||||||||||
Sbjct 311 ACCCGGGCCTTTCGGCCAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 254
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 205
>seq23
Length=120012414
Score = 87.8 bits (96), Expect = 3e-15
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||| ||||||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 625126 TCAGTGTAGCACGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 625184
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 625185 AATCTCGGGTGGC 625197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751976964830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |