Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1625 167 1e-39 seq25 73.4 2e-11 >seq1625 Length=3763 Score = 167 bits (184), Expect = 1e-39 Identities = 108/117 (92%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| || ||||||| ||||||||| || Sbjct 3626 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGCGTCAAAAA-ATAACATCGTCC 3568 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3567 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 3511 >seq25 Length=158037523 Score = 73.4 bits (80), Expect = 2e-11 Identities = 85/115 (74%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | ||| |||| || |||| |||| ||| Sbjct 71699573 GAACCCAAAGACTTTGGTTTCCTGGAAGCTGCCCCGCAGGTCATGGGAATAATGCCGCTG 71699632 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||| | ||| ||| | ||||| ||| | |||||||||||||||||| |||||| Sbjct 71699633 CATCACCAGTTGGCTTCGTTTATGGTCAGAACTACGACGGTATCTGATTGTCTTC 71699687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278391747180