Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28]
3,162 sequences; 2,553,112,587 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq1625 468 9e-130
seq18 105 1e-20
seq16 87.8 3e-15
seq25 82.4 1e-13
seq1416 78.8 2e-12
>seq1625
Length=3763
Score = 468 bits (518), Expect = 9e-130
Identities = 293/314 (93%), Gaps = 1/314 (0%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64
|||||||||||||||||||| |||| ||| || |||||||||||||||||||| ||||||
Sbjct 3197 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCTCATGCCCTTCACTGGGTGTGACGGGGA 3256
Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124
|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 3257 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 3316
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3317 TAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 3376
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3377 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 3436
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 3437 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 3495
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 3496 ACGAAAGTTAGGGG 3509
>seq18
Length=146158383
Score = 105 bits (116), Expect = 1e-20
Identities = 123/163 (75%), Gaps = 5/163 (3%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| | ||| | | | |||||||||||| |||||||||||
Sbjct 4162583 ATGCTCTTAGCTGAGTGTCCCGAGAGGCCCGAAGTGTTTACTTTGAAAGAATTAGAGTGT 4162642
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 4162643 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 4162701
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197
||||||||||||||||| | || | | |||||||| |||
Sbjct 4162702 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGG 4162744
>seq16
Length=152576986
Score = 87.8 bits (96), Expect = 3e-15
Identities = 113/153 (74%), Gaps = 5/153 (3%)
Strand=Plus/Minus
Query 49 CTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 107
||| |||| ||| || ||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 7721308 CTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 7721249
Query 108 CCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164
|| ||| | |||| ||| ||| ||| || || ||| | |||||||||||
Sbjct 7721248 TCTGAGCTGCCTGGATACTGCAGCTAAGAAAAATGGAGTAAGAC-CGAAGTTCTATTTTG 7721190
Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197
||||||| | || | | |||||||| |||
Sbjct 7721189 TTGGTTTTCGGAACTGAGGCCATGATTAAGAGG 7721157
>seq25
Length=158037523
Score = 82.4 bits (90), Expect = 1e-13
Identities = 124/174 (71%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199
||||||||| |||||||||| ||||||||||| || || | |||||||| ||| |
Sbjct 71699867 GAATAGGAC-TGCGGTTCTACTTTGTTGGTTTTCAGAACTAAGGCCATGATTAAGAGGTA 71699809
Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259
| |||||| | |||| | || ||||||||||||||| |||||
Sbjct 71699808 CGGCCGGGGGCATTCATATTGCGCCGATAGGGGTGAAATTCTTGGACCAGCGTAAGACGG 71699749
Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|| | || ||||| || ||||| ||||||||| |||||| ||| |||||||
Sbjct 71699748 ACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCAGTAATCA-AGAAGGAAAGTT 71699696
Score = 77.0 bits (84), Expect = 6e-12
Identities = 61/72 (85%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 124431363 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 124431304
Query 98 TCAAAGCAGGCC 109
||||||||||||
Sbjct 124431303 TCAAAGCAGGCC 124431292
>seq1416
Length=81360
Score = 78.8 bits (86), Expect = 2e-12
Identities = 119/165 (72%), Gaps = 7/165 (4%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGG-GGAGCCAGGACTTTTACTTTGAAAAAA--TTAGAGT 95
|||| ||| ||| |||| || ||| ||| | ||||||||||||||| | |||||
Sbjct 38867 ATGCTCTTAGCTGAGTGTCCCTCAGGACCCAAAGCATTTACTTTGAAAAAAAATGAGAGT 38926
Query 96 GTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGC 152
|||||||||||||| | | | |||| ||| ||||||| ||||||||| |
Sbjct 38927 GTTCAAAGCAGGCCCAAGCCACCTGGATACCGCAGCTAAGAATAATGGAATAGGAC-CGT 38985
Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197
||||| ||||| ||||||| | | || | | |||||||| |||
Sbjct 38986 GGTTCCATTTTATTGGTTTTTGGAACTGAGGCCATGATTAAGAGG 39030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915171061376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |