Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1625 468 9e-130 seq18 105 1e-20 seq16 87.8 3e-15 seq25 82.4 1e-13 seq1416 78.8 2e-12 >seq1625 Length=3763 Score = 468 bits (518), Expect = 9e-130 Identities = 293/314 (93%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||||||| |||||| Sbjct 3197 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCTCATGCCCTTCACTGGGTGTGACGGGGA 3256 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 3257 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 3316 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3317 TAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 3376 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3377 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 3436 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 3437 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 3495 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 3496 ACGAAAGTTAGGGG 3509 >seq18 Length=146158383 Score = 105 bits (116), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| | ||| | | | |||||||||||| ||||||||||| Sbjct 4162583 ATGCTCTTAGCTGAGTGTCCCGAGAGGCCCGAAGTGTTTACTTTGAAAGAATTAGAGTGT 4162642 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 4162643 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 4162701 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||||||||| | || | | |||||||| ||| Sbjct 4162702 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGG 4162744 >seq16 Length=152576986 Score = 87.8 bits (96), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 49 CTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 107 ||| |||| ||| || ||| | | | |||||||||||||||||||||||||||||||||| Sbjct 7721308 CTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 7721249 Query 108 CCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 || ||| | |||| ||| ||| ||| || || ||| | ||||||||||| Sbjct 7721248 TCTGAGCTGCCTGGATACTGCAGCTAAGAAAAATGGAGTAAGAC-CGAAGTTCTATTTTG 7721190 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||| | || | | |||||||| ||| Sbjct 7721189 TTGGTTTTCGGAACTGAGGCCATGATTAAGAGG 7721157 >seq25 Length=158037523 Score = 82.4 bits (90), Expect = 1e-13 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||| |||||||||| ||||||||||| || || | |||||||| ||| | Sbjct 71699867 GAATAGGAC-TGCGGTTCTACTTTGTTGGTTTTCAGAACTAAGGCCATGATTAAGAGGTA 71699809 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | |||||| | |||| | || ||||||||||||||| ||||| Sbjct 71699808 CGGCCGGGGGCATTCATATTGCGCCGATAGGGGTGAAATTCTTGGACCAGCGTAAGACGG 71699749 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || | || ||||| || ||||| ||||||||| |||||| ||| ||||||| Sbjct 71699748 ACCAGAGCAAAAGCATTTGCCAAGAATGTTTTCAGTAATCA-AGAAGGAAAGTT 71699696 Score = 77.0 bits (84), Expect = 6e-12 Identities = 61/72 (85%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 124431363 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 124431304 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 124431303 TCAAAGCAGGCC 124431292 >seq1416 Length=81360 Score = 78.8 bits (86), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 7/165 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGG-GGAGCCAGGACTTTTACTTTGAAAAAA--TTAGAGT 95 |||| ||| ||| |||| || ||| ||| | ||||||||||||||| | ||||| Sbjct 38867 ATGCTCTTAGCTGAGTGTCCCTCAGGACCCAAAGCATTTACTTTGAAAAAAAATGAGAGT 38926 Query 96 GTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGC 152 |||||||||||||| | | | |||| ||| ||||||| ||||||||| | Sbjct 38927 GTTCAAAGCAGGCCCAAGCCACCTGGATACCGCAGCTAAGAATAATGGAATAGGAC-CGT 38985 Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||| ||||| ||||||| | | || | | |||||||| ||| Sbjct 38986 GGTTCCATTTTATTGGTTTTTGGAACTGAGGCCATGATTAAGAGG 39030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915171061376