Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq4 140 1e-31 seq11 122 4e-26 seq25 118 5e-25 seq16 118 5e-25 seq3050 114 6e-24 seq7 107 9e-22 seq5 104 1e-20 seq12 100 1e-19 seq20 86.0 3e-15 seq3019 75.2 5e-12 seq1340 73.4 2e-11 seq6 73.4 2e-11 >seq4 Length=117747451 Score = 140 bits (154), Expect = 1e-31 Identities = 92/102 (90%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 834003 GGAAAAGAAACTAACCAGGATTCTCTCAGTAACGGCGAGTGAACAGGGAAGAGCCAAGCA 833944 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| |||| | || ||||| |||||||||| Sbjct 833943 CCGAATCCCCGCCGCGCGCCGCGGGGCGGGGAATGTGGCGTA 833902 >seq11 Length=89975685 Score = 122 bits (134), Expect = 4e-26 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||| |||||||||||||| |||||||||| ||||| || | Sbjct 19027278 GGAAAAGAAACTAACCAGGATTTTCTCAGTAACGGCGAATGAACAGGGAGGAGCCAAGTG 19027337 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||| ||||| ||| | ||||| ||| |||||||||| Sbjct 19027338 CCGAATCTCCGCCGCGCACCGCGGCGCAGGAAATGTGGCGTA 19027379 Score = 118 bits (130), Expect = 5e-25 Identities = 75/79 (95%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 33010138 GGAAAAGAAACTAACCAGGATTCC-TCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 33010080 Query 61 CCGAATCCCCGCCCCGCGG 79 |||||| |||||| || || Sbjct 33010079 CCGAAT-CCCGCCGCGGGG 33010062 >seq25 Length=158037523 Score = 118 bits (130), Expect = 5e-25 Identities = 68/70 (97%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 33122068 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGTG 33122127 Query 61 CCGAATCCCC 70 || ||||||| Sbjct 33122128 CCAAATCCCC 33122137 Score = 100 bits (110), Expect = 1e-19 Identities = 83/102 (81%), Gaps = 7/102 (7%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||| ||||||||||||||| |||||| |||| Sbjct 89873639 GGAAAAGAAACTAACCAGGATTTTTTCAGTAACGGCGAGT-------GAAGAGTTAAGCG 89873587 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| ||| | ||||||||| |||||||||| Sbjct 89873586 CCGAATCCCCGCCGCGCACCGCGGCGCGGGAAATGTGGCGTA 89873545 >seq16 Length=152576986 Score = 118 bits (130), Expect = 5e-25 Identities = 88/102 (86%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||| ||||||||||| || |||||||||| |||| |||| Sbjct 70521269 GGAAAAGAAACTAACCAGGATTTTCTCAGTAACGGTGAATGAACAGGGAGGAGCAAAGCG 70521210 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||| ||||| ||| | ||||||||| |||||||||| Sbjct 70521209 CCGAATCTCCGCCGCGC-CCGCGGCGCGGGAAATGTGGCGTA 70521169 >seq3050 Length=36725 Score = 114 bits (126), Expect = 6e-24 Identities = 88/103 (85%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGA-TTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| Sbjct 69 GGAAAAGAAACTAACCAGGAATTTTTTCAGTAACGGGGAGTGAACAGGGAAGAGCCCAGC 128 Query 60 GCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||| || ||||| ||| | ||||| || |||||||||| Sbjct 129 GCCGAGTCTCCGCCGCGCACCGCGGCGCAGGGAATGTGGCGTA 171 >seq7 Length=113551381 Score = 107 bits (118), Expect = 9e-22 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||| || ||||||||||||| |||||||||| | ||| |||| Sbjct 109928929 GGAAAAGAAACTAACCAGGGTTTTTTCAGTAACGGCGAATGAACAGGGAGGGGCCAAGCG 109928988 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||| ||||| |||| | |||||||| | | |||||| Sbjct 109928989 CCGAATCTCCGCCGCGCGCCGCAGCGCGGGAAACGCGGCGTA 109929030 >seq5 Length=114734182 Score = 104 bits (114), Expect = 1e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 || ||||||||||||||||||| |||||| |||| || ||| |||||| ||||| |||| Sbjct 59645574 GGGAAAGAAACTAACCAGGATTTTCTCAGTGACGGTGAATGAGCAGGGAGGAGCCAAGCG 59645633 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||| ||||| ||| | |||||||| |||||||||| Sbjct 59645634 CCAAATCTCCGCCGCGCACCGCGGCGCGGGGAATGTGGCGTA 59645675 >seq12 Length=86406422 Score = 100 bits (110), Expect = 1e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 || ||||||||||||||||||| |||||||||||||| || || |||||||||| |||| Sbjct 66909759 GGGAAAGAAACTAACCAGGATTTTCTCAGTAACGGCGAATGGACGGGGAAGAGCCAAGCG 66909818 Query 61 CCGAATCCCCGCCCCGCGGTGGGGC 85 |||| || ||||| |||| || ||| Sbjct 66909819 CCGAGTCTCCGCCGCGCGCTGCGGC 66909843 >seq20 Length=147274239 Score = 86.0 bits (94), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 13/103 (13%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||| ||||||||| |||| | |||||| |||| Sbjct 41897060 GGAAAAGAAACTAACCAGGATTCTCTCAGTAACAGCGAAT-------GAAGAGTTAAGCG 41897112 Query 61 CCGAATCCCCGCC-CCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| || | ||||||||| ||||| |||| Sbjct 41897113 CCGAATCCCCGCCGCCAC-----GGCGCGGGAAATGTGACGTA 41897150 >seq3019 Length=95720 Score = 75.2 bits (82), Expect = 5e-12 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAAC 44 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1229 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGACGAGTGAAC 1272 >seq1340 Length=9530 Score = 73.4 bits (80), Expect = 2e-11 Identities = 62/76 (82%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 30 TAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCG---CGGTGGGGCG 86 ||||||||| |||||| ||| ||||| ||||||||||| ||||| || || | ||| Sbjct 222 TAACGGCGAATGAACAAGGAGGAGCCAAGCGCCGAATCTCCGCCGCGTGCCGCAGCCGCG 281 Query 87 CGGGACATGTGGCGTA 102 ||||| |||||||||| Sbjct 282 CGGGAAATGTGGCGTA 297 >seq6 Length=112758220 Score = 73.4 bits (80), Expect = 2e-11 Identities = 76/99 (77%), Gaps = 8/99 (8%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCT-CAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||||||||||||| | |||||||||||| |||| || ||| | Sbjct 64210647 GGAAAAGAAACTAACCAGGATTTTTTTCAGTAACGGCGAATGAAGAGTTAAG-------C 64210595 Query 60 GCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGG 98 |||||||||||||| ||| |||| |||| |||||| Sbjct 64210594 GCCGAATCCCCGCCGCGCACCACGGCGTGGGAAATGTGG 64210556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230393170080