Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28]
3,162 sequences; 2,553,112,587 total letters
Query= AAMG01000750.1
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
seq4 140 1e-31
seq11 122 4e-26
seq25 118 5e-25
seq16 118 5e-25
seq3050 114 6e-24
seq7 107 9e-22
seq5 104 1e-20
seq12 100 1e-19
seq20 86.0 3e-15
seq3019 75.2 5e-12
seq1340 73.4 2e-11
seq6 73.4 2e-11
>seq4
Length=117747451
Score = 140 bits (154), Expect = 1e-31
Identities = 92/102 (90%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 834003 GGAAAAGAAACTAACCAGGATTCTCTCAGTAACGGCGAGTGAACAGGGAAGAGCCAAGCA 833944
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||||||||| |||| | || ||||| ||||||||||
Sbjct 833943 CCGAATCCCCGCCGCGCGCCGCGGGGCGGGGAATGTGGCGTA 833902
>seq11
Length=89975685
Score = 122 bits (134), Expect = 4e-26
Identities = 88/102 (86%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||||||||||||||| |||||||||||||| |||||||||| ||||| || |
Sbjct 19027278 GGAAAAGAAACTAACCAGGATTTTCTCAGTAACGGCGAATGAACAGGGAGGAGCCAAGTG 19027337
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||| ||||| ||| | ||||| ||| ||||||||||
Sbjct 19027338 CCGAATCTCCGCCGCGCACCGCGGCGCAGGAAATGTGGCGTA 19027379
Score = 118 bits (130), Expect = 5e-25
Identities = 75/79 (95%), Gaps = 2/79 (3%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 33010138 GGAAAAGAAACTAACCAGGATTCC-TCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 33010080
Query 61 CCGAATCCCCGCCCCGCGG 79
|||||| |||||| || ||
Sbjct 33010079 CCGAAT-CCCGCCGCGGGG 33010062
>seq25
Length=158037523
Score = 118 bits (130), Expect = 5e-25
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 33122068 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGTG 33122127
Query 61 CCGAATCCCC 70
|| |||||||
Sbjct 33122128 CCAAATCCCC 33122137
Score = 100 bits (110), Expect = 1e-19
Identities = 83/102 (81%), Gaps = 7/102 (7%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||||||||||||||| ||||||||||||||| |||||| ||||
Sbjct 89873639 GGAAAAGAAACTAACCAGGATTTTTTCAGTAACGGCGAGT-------GAAGAGTTAAGCG 89873587
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||||||||| ||| | ||||||||| ||||||||||
Sbjct 89873586 CCGAATCCCCGCCGCGCACCGCGGCGCGGGAAATGTGGCGTA 89873545
>seq16
Length=152576986
Score = 118 bits (130), Expect = 5e-25
Identities = 88/102 (86%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||||||||||||||| ||||||||||| || |||||||||| |||| ||||
Sbjct 70521269 GGAAAAGAAACTAACCAGGATTTTCTCAGTAACGGTGAATGAACAGGGAGGAGCAAAGCG 70521210
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||| ||||| ||| | ||||||||| ||||||||||
Sbjct 70521209 CCGAATCTCCGCCGCGC-CCGCGGCGCGGGAAATGTGGCGTA 70521169
>seq3050
Length=36725
Score = 114 bits (126), Expect = 6e-24
Identities = 88/103 (85%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGA-TTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
|||||||||||||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 69 GGAAAAGAAACTAACCAGGAATTTTTTCAGTAACGGGGAGTGAACAGGGAAGAGCCCAGC 128
Query 60 GCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||| || ||||| ||| | ||||| || ||||||||||
Sbjct 129 GCCGAGTCTCCGCCGCGCACCGCGGCGCAGGGAATGTGGCGTA 171
>seq7
Length=113551381
Score = 107 bits (118), Expect = 9e-22
Identities = 85/102 (83%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||||||| || ||||||||||||| |||||||||| | ||| ||||
Sbjct 109928929 GGAAAAGAAACTAACCAGGGTTTTTTCAGTAACGGCGAATGAACAGGGAGGGGCCAAGCG 109928988
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||| ||||| |||| | |||||||| | | ||||||
Sbjct 109928989 CCGAATCTCCGCCGCGCGCCGCAGCGCGGGAAACGCGGCGTA 109929030
>seq5
Length=114734182
Score = 104 bits (114), Expect = 1e-20
Identities = 84/102 (82%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|| ||||||||||||||||||| |||||| |||| || ||| |||||| ||||| ||||
Sbjct 59645574 GGGAAAGAAACTAACCAGGATTTTCTCAGTGACGGTGAATGAGCAGGGAGGAGCCAAGCG 59645633
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
|| |||| ||||| ||| | |||||||| ||||||||||
Sbjct 59645634 CCAAATCTCCGCCGCGCACCGCGGCGCGGGGAATGTGGCGTA 59645675
>seq12
Length=86406422
Score = 100 bits (110), Expect = 1e-19
Identities = 73/85 (86%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|| ||||||||||||||||||| |||||||||||||| || || |||||||||| ||||
Sbjct 66909759 GGGAAAGAAACTAACCAGGATTTTCTCAGTAACGGCGAATGGACGGGGAAGAGCCAAGCG 66909818
Query 61 CCGAATCCCCGCCCCGCGGTGGGGC 85
|||| || ||||| |||| || |||
Sbjct 66909819 CCGAGTCTCCGCCGCGCGCTGCGGC 66909843
>seq20
Length=147274239
Score = 86.0 bits (94), Expect = 3e-15
Identities = 81/103 (79%), Gaps = 13/103 (13%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
||||||||||||||||||||||| ||||||||| |||| | |||||| ||||
Sbjct 41897060 GGAAAAGAAACTAACCAGGATTCTCTCAGTAACAGCGAAT-------GAAGAGTTAAGCG 41897112
Query 61 CCGAATCCCCGCC-CCGCGGTGGGGCGCGGGACATGTGGCGTA 102
||||||||||||| || | ||||||||| ||||| ||||
Sbjct 41897113 CCGAATCCCCGCCGCCAC-----GGCGCGGGAAATGTGACGTA 41897150
>seq3019
Length=95720
Score = 75.2 bits (82), Expect = 5e-12
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAAC 44
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1229 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGACGAGTGAAC 1272
>seq1340
Length=9530
Score = 73.4 bits (80), Expect = 2e-11
Identities = 62/76 (82%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 30 TAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCG---CGGTGGGGCG 86
||||||||| |||||| ||| ||||| ||||||||||| ||||| || || | |||
Sbjct 222 TAACGGCGAATGAACAAGGAGGAGCCAAGCGCCGAATCTCCGCCGCGTGCCGCAGCCGCG 281
Query 87 CGGGACATGTGGCGTA 102
||||| ||||||||||
Sbjct 282 CGGGAAATGTGGCGTA 297
>seq6
Length=112758220
Score = 73.4 bits (80), Expect = 2e-11
Identities = 76/99 (77%), Gaps = 8/99 (8%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCT-CAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
|||||||||||||||||||||| | |||||||||||| |||| || ||| |
Sbjct 64210647 GGAAAAGAAACTAACCAGGATTTTTTTCAGTAACGGCGAATGAAGAGTTAAG-------C 64210595
Query 60 GCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGG 98
|||||||||||||| ||| |||| |||| ||||||
Sbjct 64210594 GCCGAATCCCCGCCGCGCACCACGGCGTGGGAAATGTGG 64210556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 230393170080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |