Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2800 367 2e-99 seq14 140 5e-31 seq25 136 6e-30 seq22 132 8e-29 seq23 116 6e-24 >seq2800 Length=3960 Score = 367 bits (406), Expect = 2e-99 Identities = 239/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 287 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 228 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 227 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 169 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 168 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 110 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 109 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 50 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 49 AAAGAGCTCTCAATCTGTC 31 >seq14 Length=171410997 Score = 140 bits (154), Expect = 5e-31 Identities = 162/217 (75%), Gaps = 15/217 (7%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| ||||| ||| | |||| |||||||||| ||||||||||| ||| | Sbjct 22981721 GTCAGTGTAGCGCCCGTGCAACCCTGGACATTTAAGGGCATCTCAGACCTGTTACTGC-T 22981663 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 | | || | || ||| | |||| | |||||||||||||| | | | | Sbjct 22981662 CTATCT-CGGGTGACTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCCG---GCC 22981607 Query 135 GATGGGG----------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | ||||| ||| |||||| | | ||||||||| |||||||||||||||| Sbjct 22981606 GCTGGGGGCTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCATTATCGGAATTAACCA 22981547 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 |||||||| ||||||| |||||||||||||||||||| Sbjct 22981546 GACAAATCGCTCCACCNACTAAGAACGGCCATGCACC 22981510 Score = 78.8 bits (86), Expect = 1e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || ||||| || |||||| |||||||||||||||| | || || || Sbjct 65494657 CTAATTAGCACGCCAAAGTCTCATTTGTTATCAGAATTAACCAGACAAACCGCTTCATCA 65494716 Query 202 ACTAAGAACGGCCATGCA 219 ||||||| ||||||||| Sbjct 65494717 GCTAAGAATGGCCATGCA 65494734 >seq25 Length=158037523 Score = 136 bits (150), Expect = 6e-30 Identities = 84/90 (93%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 71699364 TTATTGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCC 71699423 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||| ||||||||||||||||||||| Sbjct 71699424 ACGGAATTGAGAAAGAGCTATCAATCTGTC 71699453 >seq22 Length=147524369 Score = 132 bits (146), Expect = 8e-29 Identities = 178/243 (73%), Gaps = 16/243 (7%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||||| | |||| |||| | ||||||||||||||||||||| ||||||||| || | | Sbjct 100216830 TGTAGCTCCTGTGCAGCCCTGGACATCTAAGGGCATCACAGACTTGTTATTGC-TCTATC 100216888 Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-TCGATG 138 | | |||||| | ||| | | |||||||||||| | || | | | | Sbjct 100216889 T-CGGGTGGCTGAACACCACTTGCCCCTCTAAGAAGTTGGGGGACATGGGCTGCTTGCTT 100216947 Query 139 GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCA 198 ||| || ||| ||||||||| ||| ||| ||| |||||||||||||||||| Sbjct 100216948 GGGGTAGCTAGA--------GTCTCGTTCATTACCGGTATTTACCAGACAAATCACTCCA 100216999 Query 199 CCAACTAAGAACGGCCATG---CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 ||||||||||||||||||| |||||||||||| |||| |||| | || || |||| Sbjct 100217000 CCAACTAAGAACGGCCATGCACCACCACCACCCACGGAATGGAGAA--ATCTGTCCATCT 100217057 Query 256 GTC 258 ||| Sbjct 100217058 GTC 100217060 >seq23 Length=120012414 Score = 116 bits (128), Expect = 6e-24 Identities = 88/101 (87%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| ||||||| |||| | |||||||||||||||||||||||||||||| || Sbjct 625125 GTCAGTGTAGCACGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 625183 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| | || |||||| | |||||| |||||||||||||| Sbjct 625184 CAATC-TCGGGTGGCTGAACGCCAATTGTCCCTCTAAGAAG 625223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796775592522