Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28]
3,162 sequences; 2,553,112,587 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1625 370 2e-100
seq16 329 6e-88
seq2800 280 3e-73
seq6 251 1e-64
seq4 242 6e-62
seq24 233 3e-59
seq1 223 6e-56
seq997 214 3e-53
seq11 129 1e-27
>seq1625
Length=3763
Score = 370 bits (410), Expect = 2e-100
Identities = 219/227 (96%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||| | |||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 226 TACTAAACTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 168
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 108
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 107 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 48
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 47 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 1
>seq16
Length=152576986
Score = 329 bits (364), Expect = 6e-88
Identities = 249/294 (85%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 144852199 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 144852140
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 144852139 ACGACGGTCTAAACCCAGCTCACGTNCCCTATTAGTGGGTGAACAATCCAACNCTTGGTG 144852080
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 144852079 AATTCTGCTTCACAATGATAGGAAGAGCNGACATCGAAGGATCAAAAAGCGACGTCGCTA 144852020
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 144852019 TGAACGCTTGGCCNCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 144851960
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | || | |||||||| ||||| |||||| ||| |||||||
Sbjct 144851959 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCNGCTTTCACGGTCTGTATTC 144851906
>seq2800
Length=3960
Score = 280 bits (310), Expect = 3e-73
Identities = 160/163 (98%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3960 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCC 3901
Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3900 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGG 3841
Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 3840 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 3798
>seq6
Length=112758220
Score = 251 bits (278), Expect = 1e-64
Identities = 165/182 (91%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49615223 CTGTCTCACAATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 49615282
Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172
||| |||||||||||| |||||||||||||| |||||| |||||||| |||| ||
Sbjct 49615283 CTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCAGACATCAAAGGATCAGAAAGTGAC 49615342
Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 49615343 GTCACTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 49615402
Query 233 TC 234
||
Sbjct 49615403 TC 49615404
Score = 120 bits (132), Expect = 5e-25
Identities = 97/116 (84%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||||||| ||||||| | || | |||||| |||||||||||||| |||| |||
Sbjct 40009909 GAATTCTGCTTCACAATGATAG-AGGAACTGACATCAAAGGATCAAAAAGCTACGTTGCT 40009967
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
||| | |||||| |||| ||||| |||||||||||| |||||||||| ||||||
Sbjct 40009968 ATGGGCACTTGGCCGCCATTAGCCAATTATCCCTGTGGCAACTTTTCTGACACCTC 40010023
>seq4
Length=117747451
Score = 242 bits (268), Expect = 6e-62
Identities = 164/184 (89%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 13290126 ACCTGTCTCACGACTGTCTAGACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 13290067
Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170
||| | || ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 13290066 CGCCTGGTGATTTCTGCTTCACAATGATAGGAAGAGCCGATATCGAAGGATCAAAAAGTG 13290007
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||| |
Sbjct 13290006 ACGTCGCTATGAACGCTTGGCCGCCACAAACCAGTTTTCCCTGTGGTAATTTTTCTGATA 13289947
Query 231 CCTC 234
||||
Sbjct 13289946 CCTC 13289943
Score = 174 bits (192), Expect = 3e-41
Identities = 145/183 (79%), Gaps = 21/183 (11%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || |||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct 91848404 CCTGTCTCACGATGGTCTAGACCCAACTCACGTTCCCTATTAGTGGGTGAAAAATCCAAT 91848345
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||||||||||| |||||||||||||| |||
Sbjct 91848344 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGC---------------------CAA 91848306
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 91848305 CATCACTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTATCTTTTCTGACAC 91848246
Query 232 CTC 234
||
Sbjct 91848245 TTC 91848243
>seq24
Length=120003353
Score = 233 bits (258), Expect = 3e-59
Identities = 189/228 (83%), Gaps = 7/228 (3%)
Strand=Plus/Minus
Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126
||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 119999951 TCTAAACCCAGCTAACGTTCCCTATTAGTGGGCGAACAATCCAACGCTTGGTGAATTCTG 119999892
Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186
|||| |||||||||||||| ||||||||||||||||||||| ||||| || ||
Sbjct 119999891 CTTCACAATGATAGGAAGAGCAGACATCGAAGGATCAAAAAGCGACGTC------AATGC 119999838
Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246
||||| |||||||||||||||||||||||||||||||||| |||||| || | |||
Sbjct 119999837 TTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACC 119999778
Query 247 TCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| || | |||||||| ||||| | |||||| ||| ||||||||
Sbjct 119999777 CAAAAGGTCAGAAGGATCGTGAGGCC-CGCTTTCACGGTCTGTATTCA 119999731
Score = 224 bits (248), Expect = 2e-56
Identities = 166/195 (85%), Gaps = 13/195 (7%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 77343072 CCTGTCTCATGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAA- 77343014
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 77343013 GCTTGATAAATTCTGCTTCACAATGATAGGAAGAGTCAACATCGAAGGATCAAAAAGCAA 77342954
Query 172 CGTCGCTATGAACG------------CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219
||| ||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct 77342953 GGTCTCTATGAACGTTCTTGAACGCACTTGGCTGCCACAAGCCAGATATCTCTGTGGTAA 77342894
Query 220 CTTTTCTGGCACCTC 234
|||||||| || |||
Sbjct 77342893 CTTTTCTGACAACTC 77342879
Score = 95.1 bits (104), Expect = 2e-17
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 109137968 CCTGTCTCATGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 109137914
>seq1
Length=185492789
Score = 223 bits (246), Expect = 6e-56
Identities = 195/242 (81%), Gaps = 1/242 (0%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || ||||| |||||||||| |||| | || ||||| ||||||||||||
Sbjct 141042372 CCTGTCTCAAGAAGGTCTCAACCCAGCTCCAGTTCTCAAT-AGTGGNTGAACAATCCAAG 141042314
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||||||||||| ||||||||||||| ||||| |||||||||||||| |
Sbjct 141042313 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTGGACATGGAAGGATCAAAAAGTGA 141042254
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 141042253 TGTCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 141042194
Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291
||| |||| ||| | || | ||||||| ||||| ||||| |||| |||||
Sbjct 141042193 CTCCTGCCTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCAGCTTTCCTGGTCTGTAT 141042134
Query 292 TC 293
||
Sbjct 141042133 TC 141042132
Score = 212 bits (234), Expect = 1e-52
Identities = 193/242 (80%), Gaps = 1/242 (0%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || ||||| |||||||||| ||| || || |||| |||||||||||||
Sbjct 141054327 CCTGTCTCAAGAAGGTCTCAACCCAGCTCCAGTTGCCAAT-AGTGAGTGAACAATCCAAG 141054385
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||||||||||| ||||||||||||| ||||| ||||| |||||||| |
Sbjct 141054386 GCTTGGTGAATTCTGCTTCACAGTGATAGGAAGAGCAGACATGGAAGGTTCAAAAAGTGA 141054445
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 141054446 TGTCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 141054505
Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291
||| || | ||| | || | ||||||| ||||| ||||| |||| |||||
Sbjct 141054506 CTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCAGCTTTCCTGGTCTGTAT 141054565
Query 292 TC 293
||
Sbjct 141054566 TC 141054567
Score = 107 bits (118), Expect = 3e-21
Identities = 135/181 (75%), Gaps = 11/181 (6%)
Strand=Plus/Minus
Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA------AGGATCAAAAAGCA--ACG 173
||||||||| |||||||||||||| ||||| || |||||||||| | |||
Sbjct 59767546 TTCTGCTTCAA-ATGATAGGAAGAGCTGACATTGACATCAAAGGATCAAAAGTGACTACG 59767488
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
| ||||||| | |||| |||||||||| || |||||||||||||||||||||| ||||
Sbjct 59767487 TTGCTATGAGCACTTGACTGCCACAAGTCAAATATCCCTGTGGTAACTTTTCTGATACCT 59767428
Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| | || ||| | | | |||| |||| ||| | |||||||| || |||||||
Sbjct 59767427 CCTG-CTTAAAACCCAAAAGGTTAAAAGATCATGAGGTCGAACTTTCAT-GTCTGTATTC 59767370
Query 294 A 294
|
Sbjct 59767369 A 59767369
>seq997
Length=100386
Score = 214 bits (236), Expect = 3e-53
Identities = 194/242 (80%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
|| |||||| || ||||| |||||||||| |||||| || ||||||||||||||||||
Sbjct 67649 CCCGTCTCAAGAAGGTCTCAACCCAGCTCCAGTTCCCAAT-AGTGGGTGAACAATCCAAG 67707
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||| ||||||| ||||||||||||| ||||| ||||||||||| ||| |
Sbjct 67708 GCTTGGTGAAT-CTGCTTCACAATGATAGGAAGAGTGGACATGGAAGGATCAAATAGCTA 67766
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 67767 TGTCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 67826
Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291
||| || | ||| | || | ||||||| ||||| ||||| |||| |||||
Sbjct 67827 CTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCAGCTTTCCTGGTCTGTAT 67886
Query 292 TC 293
||
Sbjct 67887 TC 67888
Score = 104 bits (114), Expect = 4e-20
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
|| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 54977 TCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT 54918
Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| |||| ||| | || | ||||||| ||||| ||||| |||| |||||||
Sbjct 54917 CCTGCCTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCAGCTTTCCTGGTCTGTATTC 54858
>seq11
Length=89975685
Score = 129 bits (142), Expect = 1e-27
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208
||||| ||||||||||||| | | || ||||||||||||| |||||||||||||||||||
Sbjct 18750796 GACATTGAAGGATCAAAAATCGATGTGGCTATGAACGCTTAGCTGCCACAAGCCAGTTAT 18750737
Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268
|||| |||||||||||||| |||||| || | ||| | || | ||||||| |
Sbjct 18750736 CCCTATGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCCTGA 18750677
Query 269 GGCCACACTTTCATGGTTTGTATT 292
||| |||| ||||||||||||
Sbjct 18750676 AGCCCAGCTTTTATGGTTTGTATT 18750653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854372983872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |