Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1625 370 2e-100 seq16 329 6e-88 seq2800 280 3e-73 seq6 251 1e-64 seq4 242 6e-62 seq24 233 3e-59 seq1 223 6e-56 seq997 214 3e-53 seq11 129 1e-27 >seq1625 Length=3763 Score = 370 bits (410), Expect = 2e-100 Identities = 219/227 (96%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||| | |||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 226 TACTAAACTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 168 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 167 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 108 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 107 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 48 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 47 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 1 >seq16 Length=152576986 Score = 329 bits (364), Expect = 6e-88 Identities = 249/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 144852199 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 144852140 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | Sbjct 144852139 ACGACGGTCTAAACCCAGCTCACGTNCCCTATTAGTGGGTGAACAATCCAACNCTTGGTG 144852080 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 144852079 AATTCTGCTTCACAATGATAGGAAGAGCNGACATCGAAGGATCAAAAAGCGACGTCGCTA 144852020 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||||||||||||||||| |||||| || Sbjct 144852019 TGAACGCTTGGCCNCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 144851960 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| |||||| ||| ||||||| Sbjct 144851959 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCNGCTTTCACGGTCTGTATTC 144851906 >seq2800 Length=3960 Score = 280 bits (310), Expect = 3e-73 Identities = 160/163 (98%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 3960 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCC 3901 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3900 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGTCGAGG 3841 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3840 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 3798 >seq6 Length=112758220 Score = 251 bits (278), Expect = 1e-64 Identities = 165/182 (91%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49615223 CTGTCTCACAATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 49615282 Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||| |||||||||||| |||||||||||||| |||||| |||||||| |||| || Sbjct 49615283 CTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCAGACATCAAAGGATCAGAAAGTGAC 49615342 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 49615343 GTCACTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 49615402 Query 233 TC 234 || Sbjct 49615403 TC 49615404 Score = 120 bits (132), Expect = 5e-25 Identities = 97/116 (84%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||| | || | |||||| |||||||||||||| |||| ||| Sbjct 40009909 GAATTCTGCTTCACAATGATAG-AGGAACTGACATCAAAGGATCAAAAAGCTACGTTGCT 40009967 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||| | |||||| |||| ||||| |||||||||||| |||||||||| |||||| Sbjct 40009968 ATGGGCACTTGGCCGCCATTAGCCAATTATCCCTGTGGCAACTTTTCTGACACCTC 40010023 >seq4 Length=117747451 Score = 242 bits (268), Expect = 6e-62 Identities = 164/184 (89%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110 |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 13290126 ACCTGTCTCACGACTGTCTAGACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 13290067 Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170 ||| | || ||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 13290066 CGCCTGGTGATTTCTGCTTCACAATGATAGGAAGAGCCGATATCGAAGGATCAAAAAGTG 13290007 Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 ||||||||||||||||||||| ||||||| |||||| |||||||||||| ||||||| | Sbjct 13290006 ACGTCGCTATGAACGCTTGGCCGCCACAAACCAGTTTTCCCTGTGGTAATTTTTCTGATA 13289947 Query 231 CCTC 234 |||| Sbjct 13289946 CCTC 13289943 Score = 174 bits (192), Expect = 3e-41 Identities = 145/183 (79%), Gaps = 21/183 (11%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || |||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct 91848404 CCTGTCTCACGATGGTCTAGACCCAACTCACGTTCCCTATTAGTGGGTGAAAAATCCAAT 91848345 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| |||||||||||||| ||| Sbjct 91848344 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGC---------------------CAA 91848306 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 | || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 91848305 CATCACTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTATCTTTTCTGACAC 91848246 Query 232 CTC 234 || Sbjct 91848245 TTC 91848243 >seq24 Length=120003353 Score = 233 bits (258), Expect = 3e-59 Identities = 189/228 (83%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 ||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| Sbjct 119999951 TCTAAACCCAGCTAACGTTCCCTATTAGTGGGCGAACAATCCAACGCTTGGTGAATTCTG 119999892 Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 |||| |||||||||||||| ||||||||||||||||||||| ||||| || || Sbjct 119999891 CTTCACAATGATAGGAAGAGCAGACATCGAAGGATCAAAAAGCGACGTC------AATGC 119999838 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||| |||||||||||||||||||||||||||||||||| |||||| || | ||| Sbjct 119999837 TTGGCCACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACC 119999778 Query 247 TCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | || | |||||||| ||||| | |||||| ||| |||||||| Sbjct 119999777 CAAAAGGTCAGAAGGATCGTGAGGCC-CGCTTTCACGGTCTGTATTCA 119999731 Score = 224 bits (248), Expect = 2e-56 Identities = 166/195 (85%), Gaps = 13/195 (7%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 77343072 CCTGTCTCATGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAA- 77343014 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| ||||||||||| ||||||||||||| | |||||||||||||||||||||| Sbjct 77343013 GCTTGATAAATTCTGCTTCACAATGATAGGAAGAGTCAACATCGAAGGATCAAAAAGCAA 77342954 Query 172 CGTCGCTATGAACG------------CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 ||| ||||||||| ||||||||||||||||||| |||| ||||||||| Sbjct 77342953 GGTCTCTATGAACGTTCTTGAACGCACTTGGCTGCCACAAGCCAGATATCTCTGTGGTAA 77342894 Query 220 CTTTTCTGGCACCTC 234 |||||||| || ||| Sbjct 77342893 CTTTTCTGACAACTC 77342879 Score = 95.1 bits (104), Expect = 2e-17 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 109137968 CCTGTCTCATGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 109137914 >seq1 Length=185492789 Score = 223 bits (246), Expect = 6e-56 Identities = 195/242 (81%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || ||||| |||||||||| |||| | || ||||| |||||||||||| Sbjct 141042372 CCTGTCTCAAGAAGGTCTCAACCCAGCTCCAGTTCTCAAT-AGTGGNTGAACAATCCAAG 141042314 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| ||||||||||||| ||||| |||||||||||||| | Sbjct 141042313 GCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTGGACATGGAAGGATCAAAAAGTGA 141042254 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 141042253 TGTCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 141042194 Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 ||| |||| ||| | || | ||||||| ||||| ||||| |||| ||||| Sbjct 141042193 CTCCTGCCTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCAGCTTTCCTGGTCTGTAT 141042134 Query 292 TC 293 || Sbjct 141042133 TC 141042132 Score = 212 bits (234), Expect = 1e-52 Identities = 193/242 (80%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || ||||| |||||||||| ||| || || |||| ||||||||||||| Sbjct 141054327 CCTGTCTCAAGAAGGTCTCAACCCAGCTCCAGTTGCCAAT-AGTGAGTGAACAATCCAAG 141054385 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| ||||||||||||| ||||| ||||| |||||||| | Sbjct 141054386 GCTTGGTGAATTCTGCTTCACAGTGATAGGAAGAGCAGACATGGAAGGTTCAAAAAGTGA 141054445 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 141054446 TGTCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 141054505 Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 ||| || | ||| | || | ||||||| ||||| ||||| |||| ||||| Sbjct 141054506 CTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCAGCTTTCCTGGTCTGTAT 141054565 Query 292 TC 293 || Sbjct 141054566 TC 141054567 Score = 107 bits (118), Expect = 3e-21 Identities = 135/181 (75%), Gaps = 11/181 (6%) Strand=Plus/Minus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA------AGGATCAAAAAGCA--ACG 173 ||||||||| |||||||||||||| ||||| || |||||||||| | ||| Sbjct 59767546 TTCTGCTTCAA-ATGATAGGAAGAGCTGACATTGACATCAAAGGATCAAAAGTGACTACG 59767488 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 | ||||||| | |||| |||||||||| || |||||||||||||||||||||| |||| Sbjct 59767487 TTGCTATGAGCACTTGACTGCCACAAGTCAAATATCCCTGTGGTAACTTTTCTGATACCT 59767428 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | || ||| | | | |||| |||| ||| | |||||||| || ||||||| Sbjct 59767427 CCTG-CTTAAAACCCAAAAGGTTAAAAGATCATGAGGTCGAACTTTCAT-GTCTGTATTC 59767370 Query 294 A 294 | Sbjct 59767369 A 59767369 >seq997 Length=100386 Score = 214 bits (236), Expect = 3e-53 Identities = 194/242 (80%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 || |||||| || ||||| |||||||||| |||||| || |||||||||||||||||| Sbjct 67649 CCCGTCTCAAGAAGGTCTCAACCCAGCTCCAGTTCCCAAT-AGTGGGTGAACAATCCAAG 67707 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||| ||||||| ||||||||||||| ||||| ||||||||||| ||| | Sbjct 67708 GCTTGGTGAAT-CTGCTTCACAATGATAGGAAGAGTGGACATGGAAGGATCAAATAGCTA 67766 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 67767 TGTCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 67826 Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 ||| || | ||| | || | ||||||| ||||| ||||| |||| ||||| Sbjct 67827 CTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCAGCTTTCCTGGTCTGTAT 67886 Query 292 TC 293 || Sbjct 67887 TC 67888 Score = 104 bits (114), Expect = 4e-20 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 || ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 54977 TCCCTATGAAAGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT 54918 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| ||| | || | ||||||| ||||| ||||| |||| ||||||| Sbjct 54917 CCTGCCTAAAACCCAAAAGGTCAGAAGGATCCTGAGGCCCAGCTTTCCTGGTCTGTATTC 54858 >seq11 Length=89975685 Score = 129 bits (142), Expect = 1e-27 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||| ||||||||||||| | | || ||||||||||||| ||||||||||||||||||| Sbjct 18750796 GACATTGAAGGATCAAAAATCGATGTGGCTATGAACGCTTAGCTGCCACAAGCCAGTTAT 18750737 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 |||| |||||||||||||| |||||| || | ||| | || | ||||||| | Sbjct 18750736 CCCTATGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCCTGA 18750677 Query 269 GGCCACACTTTCATGGTTTGTATT 292 ||| |||| |||||||||||| Sbjct 18750676 AGCCCAGCTTTTATGGTTTGTATT 18750653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854372983872