Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28]
3,162 sequences; 2,553,112,587 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq2800 443 4e-122
seq23 100 5e-19
>seq2800
Length=3960
Score = 443 bits (490), Expect = 4e-122
Identities = 284/309 (92%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 122 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 181
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 241
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| |||||| ||||| | | |||||||||
Sbjct 242 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGGCCG 299
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
|||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AAAGGCCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 359
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 360 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 419
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 420 CCCTTTGTA 428
>seq23
Length=120012414
Score = 100 bits (110), Expect = 5e-19
Identities = 85/101 (84%), Gaps = 3/101 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| || ||| | |||| || | ||||| ||||||||||||||||
Sbjct 625223 CTTCTTAGAGGGACAATTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 625166
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
|||||||||||||| | |||| ||||||| |||||||||||
Sbjct 625165 ATGCCCTTAGATGTCCGGGGCTGCACGCGTGCTACACTGAC 625125
Score = 80.6 bits (88), Expect = 5e-13
Identities = 67/82 (82%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
|||||||||||| | | | |||||||||| || |||||| || ||||| ||| |||||
Sbjct 625090 ATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCCGGTCATAAGCTTGCGTT 625031
Query 307 GATTACGTCCCTGCCCTTTGTA 328
||||| |||| | |||||||||
Sbjct 625030 GATTAAGTCCGTACCCTTTGTA 625009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947170049536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |